From d39f4e36a1a590d1cda417e92bf8d69bcab5804b Mon Sep 17 00:00:00 2001
From: "Pavel N. Krivitsky" <p.krivitsky@unsw.edu.au>
Date: Sun, 26 May 2024 21:06:35 +1000
Subject: [PATCH] Updated the GitHub workflows and/or the README file to the
 latest versions.

---
 .github/workflows/R-CMD-check.yaml | 20 +++++++++++++++++++-
 1 file changed, 19 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
index 179183d..2553f54 100644
--- a/.github/workflows/R-CMD-check.yaml
+++ b/.github/workflows/R-CMD-check.yaml
@@ -159,6 +159,7 @@ jobs:
             any::rcmdcheck
             any::covr
             any::V8
+            any::xml2
           needs: |
             check
             coverage
@@ -268,5 +269,22 @@ jobs:
           _R_CHECK_CRAN_INCOMING_REMOTE_: false
           _R_CHECK_FORCE_SUGGESTS_: ${{ runner.os != 'macOS' }} # Rmpi is not available on macOS.
           ENABLE_statnet_TESTS: ${{ contains(matrix.config.flags, 'full') }}
-        run: covr::codecov(type=c("tests","examples"))
+        run: |
+          cov <- covr::package_coverage(
+            type=c("tests", "examples"),
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
+          )
+          covr::to_cobertura(cov)
         shell: Rscript {0}
+
+      - name: Upload coverage results
+        if: contains(matrix.config.flags, 'covr')
+        uses: codecov/codecov-action@v4
+        with:
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}