From 5f28b1fcc142119bbd7740a22b49909f3da2deaa Mon Sep 17 00:00:00 2001 From: "Pavel N. Krivitsky" Date: Tue, 2 Apr 2024 10:00:53 +1100 Subject: [PATCH] Converted the JoSS URLs into DOIs. --- R/access.R | 28 ++++++++++++++-------------- R/coercion.R | 6 +++--- R/constructors.R | 4 ++-- R/layout.R | 2 +- R/misc.R | 4 ++-- R/network-package.R | 2 +- R/operators.R | 8 ++++---- R/plot.R | 6 +++--- man/add.edges.Rd | 2 +- man/add.vertices.Rd | 2 +- man/as.matrix.network.Rd | 2 +- man/as.network.matrix.Rd | 2 +- man/as.sociomatrix.Rd | 2 +- man/attribute.methods.Rd | 2 +- man/deletion.methods.Rd | 2 +- man/edgeset.constructors.Rd | 2 +- man/get.edges.Rd | 2 +- man/get.neighborhood.Rd | 2 +- man/is.adjacent.Rd | 2 +- man/loading.attributes.Rd | 2 +- man/network-operators.Rd | 2 +- man/network.Rd | 2 +- man/network.arrow.Rd | 2 +- man/network.density.Rd | 2 +- man/network.dyadcount.Rd | 2 +- man/network.edgecount.Rd | 2 +- man/network.extraction.Rd | 2 +- man/network.indicators.Rd | 2 +- man/network.initialize.Rd | 2 +- man/network.layout.Rd | 2 +- man/network.naedgecount.Rd | 2 +- man/network.size.Rd | 2 +- man/network.vertex.Rd | 2 +- man/permute.vertexIDs.Rd | 2 +- man/plot.network.Rd | 2 +- man/prod.network.Rd | 2 +- man/sum.network.Rd | 2 +- man/which.matrix.type.Rd | 2 +- 38 files changed, 60 insertions(+), 60 deletions(-) diff --git a/R/access.R b/R/access.R index 8b94474..9ba888c 100644 --- a/R/access.R +++ b/R/access.R @@ -104,7 +104,7 @@ #' \code{\link{network.edgelist}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords classes graphs #' @examples #' @@ -253,7 +253,7 @@ add.edges.network<-function(x, tail, head, names.eval=NULL, vals.eval=NULL, ...) #' \code{\link{set.vertex.attribute}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords classes graphs #' @examples #' @@ -430,7 +430,7 @@ add.vertices.network<-function(x, nv, vattr=NULL, last.mode=TRUE, ...){ #' \code{\link{as.matrix.network}}, \code{\link{network.extraction}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @author Carter T. Butts \email{buttsc@uci.edu} #' @examples #' #Create a network with three edges @@ -538,7 +538,7 @@ delete.edge.attribute.network <- function(x, attrname, ...) { #' #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @author Carter T. Butts \email{buttsc@uci.edu} #' #' @seealso \code{\link{get.edgeIDs}}, \code{\link{network.extraction}}, @@ -770,7 +770,7 @@ get.edge.value.list <- get.edge.value.network #' @seealso \code{\link{get.neighborhood}}, \code{\link{valid.eids}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords classes graphs #' @examples #' @@ -1056,7 +1056,7 @@ get.network.attribute.network <- function(x, attrname, unlist=FALSE, ...) { #' @seealso \code{\link{get.edges}}, \code{\link{is.adjacent}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' #' Wasserman, S. and Faust, K. 1994. \emph{Social Network Analysis: Methods #' and Applications.} Cambridge: Cambridge University Press. @@ -1183,7 +1183,7 @@ get.vertex.attribute.network <- function(x, attrname, na.omit=FALSE, null.na=TRU #' \code{set.network.attribute}, \code{\link{add.edges}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords classes graphs #' @examples #' @@ -1254,7 +1254,7 @@ has.loops<-function(x){ #' \code{\link{attribute.methods}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' #' Wasserman, S. and Faust, K. 1994. \emph{Social Network Analysis: Methods #' and Applications}. Cambridge: Cambridge University Press. @@ -1383,7 +1383,7 @@ is.multiplex<-function(x){ #' \code{\link{get.network.attribute}}, \code{is.adjacent}, \code{\link{is.na}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords classes graphs #' @examples #' @@ -1504,7 +1504,7 @@ is.na.network<-function(x){ #' \code{\link{network.indicators}}, \code{\link{plot.network}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords classes graphs #' @examples #' @@ -1611,7 +1611,7 @@ network.dyadcount<-function(x, ...) UseMethod("network.dyadcount") #' \code{\link{network.edgecount}}, \code{\link{is.directed}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords classes graphs #' @examples #' @@ -1716,7 +1716,7 @@ network.edgecount<-function(x, ...) UseMethod("network.edgecount") #' @seealso \code{\link{get.network.attribute}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords classes graphs #' @examples #' @@ -1767,7 +1767,7 @@ network.naedgecount.network<-function(x, ...){ #' @seealso \code{\link{get.network.attribute}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords classes graphs #' @examples #' @@ -1838,7 +1838,7 @@ network.vertex.names<-function(x){ #' @seealso \code{\link{network}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords manip graphs #' @examples #' diff --git a/R/coercion.R b/R/coercion.R index 0308870..67d9800 100644 --- a/R/coercion.R +++ b/R/coercion.R @@ -99,7 +99,7 @@ #' \code{\link{network.extraction}},\code{\link{as.edgelist}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords classes graphs #' @examples #' @@ -375,7 +375,7 @@ as.network<-function(x,...) #' \code{\link{which.matrix.type}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords classes graphs #' @examples #' @@ -560,7 +560,7 @@ as.network.matrix<-function(x, matrix.type=NULL, #' @seealso \code{\link{as.matrix.network}}, \code{\link{network}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords graphs manip #' @examples #' diff --git a/R/constructors.R b/R/constructors.R index 2fbf03b..a633d1f 100644 --- a/R/constructors.R +++ b/R/constructors.R @@ -119,7 +119,7 @@ network<-function(x, vertex.attr=NULL, vertex.attrnames=NULL, #' #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' #' @author Carter T. Butts \email{buttsc@uci.edu} and David Hunter #' \email{dhunter@stat.psu.edu} @@ -432,7 +432,7 @@ network.incidence<-function(x, g, ignore.eval=TRUE, names.eval=NULL, ...){ #' @seealso \code{\link{network}}, \code{\link{as.network.matrix}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords classes graphs #' @examples #' diff --git a/R/layout.R b/R/layout.R index 780bdb6..e15311a 100644 --- a/R/layout.R +++ b/R/layout.R @@ -100,7 +100,7 @@ #' @seealso \code{\link{plot.network}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' #' Fruchterman, T.M.J. and Reingold, E.M. (1991). \dQuote{Graph Drawing by #' Force-directed Placement.} \emph{Software - Practice and Experience,} diff --git a/R/misc.R b/R/misc.R index 35d2e26..a3ba285 100644 --- a/R/misc.R +++ b/R/misc.R @@ -354,7 +354,7 @@ print.mixingmatrix <- function(x, ...) { #' @seealso \code{\link{network.edgecount}}, \code{\link{network.size}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' #' Wasserman, S. and Faust, K. (1994). \emph{Social Network Analysis: Methods #' and Applications.} Cambridge: Cambridge University Press. @@ -519,7 +519,7 @@ is.discrete<-function(x){ #' @seealso \code{\link{as.matrix.network}}, \code{\link{as.network.matrix}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords graphs #' @examples #' diff --git a/R/network-package.R b/R/network-package.R index 7984e3f..16b0149 100644 --- a/R/network-package.R +++ b/R/network-package.R @@ -183,7 +183,7 @@ NULL #' #' Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational #' Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords classes graphs #' @examples #' diff --git a/R/operators.R b/R/operators.R index 0c3f792..4a4f7a5 100644 --- a/R/operators.R +++ b/R/operators.R @@ -156,7 +156,7 @@ out_of_bounds <- function(x, el){ #' \code{\link{network.operators}}, and \code{\link{get.inducedSubgraph}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords graphs manip #' @examples #' @@ -554,7 +554,7 @@ out_of_bounds <- function(x, el){ #' @seealso \code{\link{network.extraction}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' #' Wasserman, S. and Faust, K. (1994). \emph{Social Network Analysis: Methods #' and Applications.} Cambridge: University of Cambridge Press. @@ -1292,7 +1292,7 @@ networkOperatorSetup<-function(x,y=NULL){ #' @seealso \code{\link{network.operators}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords arith graphs #' @examples #' @@ -1357,7 +1357,7 @@ prod.network<-function(..., attrname=NULL, na.rm=FALSE){ #' @seealso \code{\link{network.operators}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords arith graphs #' @examples #' diff --git a/R/plot.R b/R/plot.R index b79708d..c19df22 100644 --- a/R/plot.R +++ b/R/plot.R @@ -122,7 +122,7 @@ make.arrow.poly.coords<-function(x0,y0,x1,y1,ahangle,ahlen,swid,toff,hoff,ahead, #' \code{\link{polygon}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords aplot graphs #' @examples #' @@ -333,7 +333,7 @@ make.vertex.poly.coords<-function(x,y,r,s,rot){ #' @seealso \code{\link{plot.network}}, \code{\link{polygon}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' @keywords aplot graphs #' @examples #' @@ -600,7 +600,7 @@ network.edgelabel<-function(px0,py0,px1,py1,label,directed,loops=FALSE,cex,curve #' \code{\link{network.loop}}, \code{\link{network.vertex}} #' @references Butts, C. T. (2008). \dQuote{network: a Package for Managing #' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -#' \url{https://www.jstatsoft.org/v24/i02/} +#' \doi{10.18637/jss.v024.i02} #' #' Wasserman, S., and Faust, K. (1994). \emph{Social Network Analysis: #' Methods and Applications.} Cambridge: Cambridge University Press. diff --git a/man/add.edges.Rd b/man/add.edges.Rd index 1a3b56b..1a482a6 100644 --- a/man/add.edges.Rd +++ b/man/add.edges.Rd @@ -105,7 +105,7 @@ list.edge.attributes(valueNet) \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{network}}, \code{\link{add.vertices}}, diff --git a/man/add.vertices.Rd b/man/add.vertices.Rd index 1818ca1..52d87ba 100644 --- a/man/add.vertices.Rd +++ b/man/add.vertices.Rd @@ -75,7 +75,7 @@ get.network.attribute(bip,'bipartite') \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{network}}, \code{\link{get.vertex.attribute}}, diff --git a/man/as.matrix.network.Rd b/man/as.matrix.network.Rd index 859d36a..9c24b54 100644 --- a/man/as.matrix.network.Rd +++ b/man/as.matrix.network.Rd @@ -148,7 +148,7 @@ g[1:2,3:5] # Obtain a submatrix \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{which.matrix.type}}, \code{\link{network}}, diff --git a/man/as.network.matrix.Rd b/man/as.network.matrix.Rd index 411bb4d..a295e07 100644 --- a/man/as.network.matrix.Rd +++ b/man/as.network.matrix.Rd @@ -99,7 +99,7 @@ as.network(m, matrix.type='edgelist') \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{edgeset.constructors}}, \code{\link{network}}, diff --git a/man/as.sociomatrix.Rd b/man/as.sociomatrix.Rd index 1cc8a4c..2ad96fa 100644 --- a/man/as.sociomatrix.Rd +++ b/man/as.sociomatrix.Rd @@ -74,7 +74,7 @@ as.sociomatrix(list(net,g)) #Returns as list of matrices \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{as.matrix.network}}, \code{\link{network}} diff --git a/man/attribute.methods.Rd b/man/attribute.methods.Rd index 8ed1e1b..b5d770c 100644 --- a/man/attribute.methods.Rd +++ b/man/attribute.methods.Rd @@ -288,7 +288,7 @@ as.sociomatrix(g,"myeval") # Or like this \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{loading.attributes}},\code{\link{network}}, diff --git a/man/deletion.methods.Rd b/man/deletion.methods.Rd index 87ae4cc..32184cd 100644 --- a/man/deletion.methods.Rd +++ b/man/deletion.methods.Rd @@ -74,7 +74,7 @@ g[,] \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{get.edgeIDs}}, \code{\link{network.extraction}}, diff --git a/man/edgeset.constructors.Rd b/man/edgeset.constructors.Rd index 702fe64..a745829 100644 --- a/man/edgeset.constructors.Rd +++ b/man/edgeset.constructors.Rd @@ -107,7 +107,7 @@ as.matrix(g) \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{loading.attributes}}, \code{\link{network}}, diff --git a/man/get.edges.Rd b/man/get.edges.Rd index 7aea745..b72a1f2 100644 --- a/man/get.edges.Rd +++ b/man/get.edges.Rd @@ -90,7 +90,7 @@ get.edgeIDs(g,1,neighborhood="in") \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{get.neighborhood}}, \code{\link{valid.eids}} diff --git a/man/get.neighborhood.Rd b/man/get.neighborhood.Rd index ac6dd19..00ce8c3 100644 --- a/man/get.neighborhood.Rd +++ b/man/get.neighborhood.Rd @@ -43,7 +43,7 @@ get.neighborhood(g,1,"combined") \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} Wasserman, S. and Faust, K. 1994. \emph{Social Network Analysis: Methods and Applications.} Cambridge: Cambridge University Press. diff --git a/man/is.adjacent.Rd b/man/is.adjacent.Rd index 913d8c4..946a160 100644 --- a/man/is.adjacent.Rd +++ b/man/is.adjacent.Rd @@ -70,7 +70,7 @@ g[2,1]==1 #FALSE \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} Wasserman, S. and Faust, K. 1994. \emph{Social Network Analysis: Methods and Applications}. Cambridge: Cambridge University Press. diff --git a/man/loading.attributes.Rd b/man/loading.attributes.Rd index 9f87ef0..2971d25 100644 --- a/man/loading.attributes.Rd +++ b/man/loading.attributes.Rd @@ -203,7 +203,7 @@ Analysis with R and statnet} Sunbelt XXXII Workshop Series, March 13, 2012. Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{attribute.methods}}, \code{\link{as.network.matrix}}, diff --git a/man/network-operators.Rd b/man/network-operators.Rd index 9e6739a..3cfb74b 100644 --- a/man/network-operators.Rd +++ b/man/network-operators.Rd @@ -132,7 +132,7 @@ gcgt \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} Wasserman, S. and Faust, K. (1994). \emph{Social Network Analysis: Methods and Applications.} Cambridge: University of Cambridge Press. diff --git a/man/network.Rd b/man/network.Rd index f3656a9..c942e51 100644 --- a/man/network.Rd +++ b/man/network.Rd @@ -301,7 +301,7 @@ as.data.frame(hyper_g, unit = "vertices") \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{network.initialize}}, \code{\link{attribute.methods}}, diff --git a/man/network.arrow.Rd b/man/network.arrow.Rd index 0b44123..440657e 100644 --- a/man/network.arrow.Rd +++ b/man/network.arrow.Rd @@ -93,7 +93,7 @@ incident to vertices of varying radii. \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{plot.network}}, \code{\link{network.loop}}, diff --git a/man/network.density.Rd b/man/network.density.Rd index f3d2b2b..397e279 100644 --- a/man/network.density.Rd +++ b/man/network.density.Rd @@ -48,7 +48,7 @@ network.density(g) #Calculate the density \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} Wasserman, S. and Faust, K. (1994). \emph{Social Network Analysis: Methods and Applications.} Cambridge: Cambridge University Press. diff --git a/man/network.dyadcount.Rd b/man/network.dyadcount.Rd index d177c84..e7e9774 100644 --- a/man/network.dyadcount.Rd +++ b/man/network.dyadcount.Rd @@ -45,7 +45,7 @@ network.dyadcount(g)==3 #nC2 in undirected case \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{get.network.attribute}}, diff --git a/man/network.edgecount.Rd b/man/network.edgecount.Rd index 1bb20ae..c97db3a 100644 --- a/man/network.edgecount.Rd +++ b/man/network.edgecount.Rd @@ -61,7 +61,7 @@ network.edgecount(g)==3 #Verify the edgecount \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{get.network.attribute}} diff --git a/man/network.extraction.Rd b/man/network.extraction.Rd index 4335a8e..f98b84b 100644 --- a/man/network.extraction.Rd +++ b/man/network.extraction.Rd @@ -160,7 +160,7 @@ short forms are more succinct, but may produce less readable code. \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{is.adjacent}}, \code{\link{as.sociomatrix}}, diff --git a/man/network.indicators.Rd b/man/network.indicators.Rd index 69f72f8..a4495ff 100644 --- a/man/network.indicators.Rd +++ b/man/network.indicators.Rd @@ -80,7 +80,7 @@ has.loops(g) \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{network}}, \code{\link{get.network.attribute}}, diff --git a/man/network.initialize.Rd b/man/network.initialize.Rd index b1e02fd..354afa7 100644 --- a/man/network.initialize.Rd +++ b/man/network.initialize.Rd @@ -49,7 +49,7 @@ g<-network.initialize(5) #Create an empty graph on 5 vertices \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{network}}, \code{\link{as.network.matrix}} diff --git a/man/network.layout.Rd b/man/network.layout.Rd index 35504d3..76c423f 100644 --- a/man/network.layout.Rd +++ b/man/network.layout.Rd @@ -91,7 +91,7 @@ from the \code{\link[sna]{gplot.layout}} routines of the \code{sna} package. \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} Fruchterman, T.M.J. and Reingold, E.M. (1991). \dQuote{Graph Drawing by Force-directed Placement.} \emph{Software - Practice and Experience,} diff --git a/man/network.naedgecount.Rd b/man/network.naedgecount.Rd index 3a92ee5..4289fd4 100644 --- a/man/network.naedgecount.Rd +++ b/man/network.naedgecount.Rd @@ -67,7 +67,7 @@ network.edgecount(is.na(g)) #Same as above \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{network.edgecount}}, diff --git a/man/network.size.Rd b/man/network.size.Rd index f197b4b..87d9643 100644 --- a/man/network.size.Rd +++ b/man/network.size.Rd @@ -32,7 +32,7 @@ network.size(g) \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{get.network.attribute}} diff --git a/man/network.vertex.Rd b/man/network.vertex.Rd index 67cdc9f..a657e83 100644 --- a/man/network.vertex.Rd +++ b/man/network.vertex.Rd @@ -68,7 +68,7 @@ network.vertex(cos((1:10)/10*2*pi),sin((1:10)/10*2*pi),col=1:10, \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{plot.network}}, \code{\link{polygon}} diff --git a/man/permute.vertexIDs.Rd b/man/permute.vertexIDs.Rd index 7f4aca4..4dc4a3a 100644 --- a/man/permute.vertexIDs.Rd +++ b/man/permute.vertexIDs.Rd @@ -41,7 +41,7 @@ all(flo[n:1,n:1]==as.sociomatrix(nflo)) #Should be TRUE \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{network}} diff --git a/man/plot.network.Rd b/man/plot.network.Rd index 40ae9bc..dda3f18 100644 --- a/man/plot.network.Rd +++ b/man/plot.network.Rd @@ -240,7 +240,7 @@ plot(nflo, vertex.cex=apply(flo,2,sum)+1, usearrows=FALSE, \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} Wasserman, S., and Faust, K. (1994). \emph{Social Network Analysis: Methods and Applications.} Cambridge: Cambridge University Press. diff --git a/man/prod.network.Rd b/man/prod.network.Rd index 835f80c..83c2906 100644 --- a/man/prod.network.Rd +++ b/man/prod.network.Rd @@ -56,7 +56,7 @@ as.sociomatrix(pouch,attrname="marsupial") #Recover the marsupial \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{network.operators}} diff --git a/man/sum.network.Rd b/man/sum.network.Rd index fa4e264..d6720b9 100644 --- a/man/sum.network.Rd +++ b/man/sum.network.Rd @@ -55,7 +55,7 @@ as.sociomatrix(pouch,attrname="marsupial") #Recover the marsupial \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{network.operators}} diff --git a/man/which.matrix.type.Rd b/man/which.matrix.type.Rd index 0c3e1be..83ed846 100644 --- a/man/which.matrix.type.Rd +++ b/man/which.matrix.type.Rd @@ -42,7 +42,7 @@ user is not possible. \references{ Butts, C. T. (2008). \dQuote{network: a Package for Managing Relational Data in R.} \emph{Journal of Statistical Software}, 24(2). -\url{https://www.jstatsoft.org/v24/i02/} +\doi{10.18637/jss.v024.i02} } \seealso{ \code{\link{as.matrix.network}}, \code{\link{as.network.matrix}}