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BedAnnotateGenes tool help

BedAnnotateGenes (0.1-925-g71012e7)

Annotates BED file regions with gene names.

Optional parameters:
  -in <file>    Input BED file. If unset, reads from STDIN.
                Default value: ''
  -out <file>   Output BED file. If unset, writes to STDOUT.
                Default value: ''
  -extend <int> The number of bases to extend the gene regions before annotation.
                Default value: '0'
  -test         Uses the test database instead of on the production database.
                Default value: 'false'
  -clear        Clear all annotations present in the input file.
                Default value: 'false'

Special parameters:
  --help        Shows this help and exits.
  --version     Prints version and exits.
  --changelog   Prints changeloge and exits.
  --tdx         Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.

BedAnnotateGenes changelog

BedAnnotateGenes 0.1-925-g71012e7

2017-11-28 Added 'clear' flag.
2017-11-03 Now appends a column to the BED file instead of always writing it into the 4th column.

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