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VcfToTsv tool help

VcfToTsv (2020_03-260-ge35d12de)

Converts a VCF file to a tab-separated text file.

Multi-allelic variants are supported. All alternative sequences are stored as a comma-seperated list.
Multi-sample VCFs are supported. For every combination of FORMAT and SAMPLE a seperate column is generated and named in the following way: <SAMPLEID>_<FORMATID>_<format>.

Mandatory parameters:
  -in <file>   Input variant list in VCF format.
  -out <file>  Output variant list in TSV format.

Special parameters:
  --help       Shows this help and exits.
  --version    Prints version and exits.
  --changelog  Prints changeloge and exits.
  --tdx        Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.

VcfToTsv changelog

VcfToTsv 2020_03-260-ge35d12de

2020-08-07 Multi-allelic and Multi-sample VCFs are supported.

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