CI-CD.yml

name: CI-CD

on: [push]

jobs:
  build-linux:
    runs-on: ubuntu-latest
    strategy:
      max-parallel: 5
      matrix:
        python-version: ['3.10', '3.11', '3.12']

    steps:
      - uses: actions/checkout@v3

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v3
        with:
          python-version: ${{ matrix.python-version }}

      - name: Add conda to system path
        run: |
          echo $CONDA/bin >> $GITHUB_PATH

      - name: Install dependencies
        run: |
          conda install -y python=${{ matrix.python-version }}
          conda env update --file environment.yml --name base

      - name: Install package and its entry points
        run: |
          pip install .

      - name: Install linter and formatter
        run: |
          python -m pip install shyaml flake8 black black-nb flake8-nb

      - name: Run black formatter
        run: |
          black -l 99 .

      - name: Install pytest and run tests
        run: |
          pip install pytest pytest-cov
          if [ "${{ matrix.python-version }}" = "3.12" ]; then
            pytest -vv --cov=openmmdl --cov-report=xml --cov-report=html --color=yes openmmdl/tests/
          else
            pytest openmmdl/tests/
          fi

      - name: Upload coverage reports to Codecov
        if: matrix.python-version == '3.12'
        uses: codecov/codecov-action@v4.0.1
        with:
          token: ${{ secrets.CODECOV_TOKEN }}