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Update configurePdbFile.html
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talagayev authored Aug 7, 2024
1 parent 0494487 commit 5b0eb7f
Showing 1 changed file with 9 additions and 2 deletions.
11 changes: 9 additions & 2 deletions openmmdl/openmmdl_setup/templates/configurePdbFile.html
Original file line number Diff line number Diff line change
Expand Up @@ -46,6 +46,13 @@
<div class="col-md-10" title="The supported formats are SDF, MOL and MOL2"> {{fileinput('sdfFile') }}</div>
</div>
<div class="form-group">
<label for="smallMoleculeForceField" class="control-label col-md-2">Small Molecule Force Field</label>
<div class="col-md-10"><select name="smallMoleculeForceField" id="smallMoleculeForceField" class="form-control" title="Select the preferred small molecule force field" onchange="optionChanged()">
<option value="gaff" selected>GAFF</option>
<option value="smirnoff">SMIRNOFF</option>
</select></div>
</div>
<div class="form-group">
<label for="ligandMinimization" class="control-label col-md-2">Ligand Minimization</label>
<div class="col-md-10"><select name="ligandMinimization" id="ligandMinimization" class="form-control" title="Minimize ligand with MMFF94 rdkit without protein" onchange="optionChanged()">
<option value="False" selected>No</option>
Expand All @@ -66,8 +73,8 @@
</form>
<script>
var amber14WaterModels = [
["TIP3P", "TIP3P", false],
["TIP3P-FB", "TIP3P-FB", true],
["TIP3P", "TIP3P", true],
["TIP3P-FB", "TIP3P-FB", false],
["SPC/E", "SPC/E", false],
["TIP4P-Ew", "TIP4P-Ew", false],
["TIP4P-FB", "TIP4P-FB", false],
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