pyproject.toml

[build-system]
requires = ["setuptools"]
build-backend = "setuptools.build_meta"

[project]
name = "sleap-roots"
authors = [
    {name = "Elizabeth Berrigan", email = "eberrigan@salk.edu"},
    {name = "Lin Wang", email = "linwang@salk.edu"},
    {name = "Talmo Pereira", email = "talmo@salk.edu"}
]
description="Analysis tools for SLEAP-based plant root phenotyping."
requires-python = ">=3.7"
keywords = ["sleap", "plants", "roots", "phenotyping"]
license = {text = "BSD-3-Clause"}
classifiers = [
    "Programming Language :: Python :: 3.7",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11"
]
dependencies = [
    "numpy",
    "h5py",
    "attrs",
    "pandas",
    "matplotlib",
    "seaborn",
    "sleap-io>=0.0.11",
    "scikit-image",
    "shapely"
]
dynamic = ["version", "readme"]

[tool.setuptools.dynamic]
version = {attr = "sleap_roots.__version__"}
readme = {file = ["README.md"], content-type="text/markdown"}

[tool.setuptools.packages.find]
include = ["sleap_roots"]  # Include only the sleap_roots package
exclude = ["notebooks"]  # Exclude the notebooks directory
namespaces = false

[project.optional-dependencies]
dev = [
    "pytest",
    "pytest-cov",
    "black",
    "pydocstyle",
    "toml",
    "twine",
    "build"
]

[project.urls]
Homepage = "https://github.com/talmolab/sleap-roots"
Repository = "https://github.com/talmolab/sleap-roots"

[tool.black]
line-length = 88

[pydocstyle]
convention = "google"
match-dir = "sleap_roots"