From 4a8e1b4bd82a2b5250c353428a399c555379d5a0 Mon Sep 17 00:00:00 2001 From: Lukas Heumos Date: Wed, 7 Feb 2024 11:29:11 +0100 Subject: [PATCH] Remove whitespace --- modules/multi/gene_demultiplexing.nf | 1 - 1 file changed, 1 deletion(-) diff --git a/modules/multi/gene_demultiplexing.nf b/modules/multi/gene_demultiplexing.nf index 2567e7f..e2e5cf3 100644 --- a/modules/multi/gene_demultiplexing.nf +++ b/modules/multi/gene_demultiplexing.nf @@ -35,7 +35,6 @@ process subset_bam_to_comon_variants{ script: """ - bcftools sort ${vcf} -Oz -o sorted.vcf.gz filter_bam_file_for_popscle_dsc_pileup.sh ${sam} ${barcodes} sorted.vcf.gz ${sampleId}__filtered_bam_file.bam """