From 6646ab32abc17cbf90a502d4cf8ac89dd8f21ae0 Mon Sep 17 00:00:00 2001 From: Xichen Wu Date: Thu, 9 Nov 2023 20:20:41 +0100 Subject: [PATCH] fix test data loc bug --- test.config | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/test.config b/test.config index 2c14437..5a60ee6 100644 --- a/test.config +++ b/test.config @@ -10,8 +10,8 @@ params { bam = "$projectDir/test_data/jurkat_293t_downsampled_n500_full_bam.bam" bai = "$projectDir/test_data/jurkat_293t_downsampled_n500_full_bam.bam.bai" barcodes = "$projectDir/test_data/barcodes.tsv" - fasta = "$projectDir/test_data/refdata-cellranger-hg19-3.0.0/fasta/genome_chr1.fa" - fasta_index = "$projectDir/test_data/refdata-cellranger-hg19-3.0.0/fasta/genome_chr1.fa.fai" + fasta = "$projectDir/test_data/genome_chr1.fa" + fasta_index = "$projectDir/test_data/genome_chr1.fa.fai" nsample = 2 common_variants_scSplit = "$projectDir/test_data/common_variants_hg19_list.vcf" common_variants_souporcell = "$projectDir/test_data/common_variants_hg19.vcf"