From 9f809e6ef8f700411977900b1b470d2db6ba2311 Mon Sep 17 00:00:00 2001
From: Xichen Wu <xichenwu@outlook.com>
Date: Thu, 9 Nov 2023 20:58:42 +0100
Subject: [PATCH] solve conda env issue

---
 modules/hash_demulti/demuxem.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/hash_demulti/demuxem.nf b/modules/hash_demulti/demuxem.nf
index 65b5033..71493e7 100644
--- a/modules/hash_demulti/demuxem.nf
+++ b/modules/hash_demulti/demuxem.nf
@@ -5,7 +5,7 @@ process demuxem{
     publishDir "$projectDir/$params.outdir/$sampleId/$params.mode/hash_demulti/demuxem", mode:'copy'
     label 'small_mem'
 
-    conda "python bioconda::pegasuspy pandas scanpy demuxEM"
+    conda "bioconda::pegasuspy bioconda::scanpy bioconda::demuxEM" 
     
     input:
         tuple val(sampleId), path(raw_hto_matrix_dir, stageAs: "hto_data_${params.hto_matrix_demuxem}"),