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identify_metabolites() unable to find package ‘metID’ #5

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goterm opened this issue Nov 8, 2023 · 0 comments
Open

identify_metabolites() unable to find package ‘metID’ #5

goterm opened this issue Nov 8, 2023 · 0 comments

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@goterm
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goterm commented Nov 8, 2023

Hello,

trying to run identify_metabolites():

metid::identify_metabolites(ms1.data = "MS1_annotations.csv",
ms1.match.ppm = 10,
rt.match.tol = 1000000,
polarity = "negative",
column = "rp",
path = path,
candidate.num = 3,
database = "keggMS1Database_1.0",
threads = 5)

but it returns:

Error: BiocParallel errors
5 remote errors, element index: 1, 2, 3, 4, 5
73 unevaluated and other errors
first remote error:
Error in .requirePackage(package): unable to find required package ‘metID’

why is identify_metabolites() trying to load metID?

I have installed metid as follows:
if(!require(remotes)){
install.packages("remotes")
}
remotes::install_gitlab("tidymass/metid", force = TRUE)
library(metid)

any suggestions on how to fix this?
thanks

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