_site.yml

name: "A collection of poorly-executed thoughts and essays"
navbar:
  title: "HOME"
  left:
    - text: "Fisher vs Stouffer"
      href: FisherVsStouffer.html
    - text: "2 groups"
      href: twoGroupsBackground.html
    - text: "empirical FDR"
      href: empiricalFDR.html
    - text: "Good-Turing vs Laplace"
      href: CRISPR_qc/logNormalPoissonGoodTuring.html
    - text: "signal to noise ratio in screens"
      href: CRISPR_qc/CorrelationBreakdown.html
    - text: "What's a test set?"
      href: crispr_tko/tree_model/tree_model.html
    - text: "intro CRISPR screens"
      href: IntroToCRISPRiaScreenAnalysis/Intro2CRISPRScreenAnalysis.html
    - text: "Bioinformatics Engineer Exam"
      href: EpicBlog/EngineeringInterviewBlogPost.html
    - text: "Gini Bias"
      href: gini.html
    - text: "Intro Tree-Based ML Models"
      href: presentations/AnIntroductiontoTree-basedMLmodels.pdf
    - text: "Intro Mixture Models"
      href: presentations/AnIntroductionToMixtureModelsAndTheirApplicationInBiologicalSciences.pdf
    - text: "LLM embeddings in SSM"
      href: ssm/ssm_embed.html
    - text: "Learning Man LLM"
      href: presentations/LearningMan_LargeLanguageModels.pdf
    - text: "you need a test set"
      href: you_need_a_test_set/you_need_a_test_set.html
    - text: "GMMs vs k-means"
      href: kmeans_gmm/gmm_vs_kmeans.html
    - text: "Lindsey's method"
      href: lindseys_method/Lindseys_method.html
output_dir: "."
output:
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    theme: yeti
    highlight: textmate
#    include:
#      after_body: _footer.html