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Trouble updating resfinder database #192

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Nosi-Msomi opened this issue Nov 7, 2022 · 0 comments
Open

Trouble updating resfinder database #192

Nosi-Msomi opened this issue Nov 7, 2022 · 0 comments

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@Nosi-Msomi
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Hi :)

I've encountered an error when trying to update the refinder database. The error I get is that there are duplicate seq ids that are found. Below is from the log file

Building a new DB, current time: 11/07/2022 11:22:49
New DB name: /Users/nosi/opt/anaconda3/envs/abricate/db/resfinder/sequences
New DB title: resfinder
Sequence type: Nucleotide
Keep MBits: T
Maximum file size: 1000000000B

volume: /Users/nosi/opt/anaconda3/envs/abricate/db/resfinder/sequences

file: /Users/nosi/opt/anaconda3/envs/abricate/db/resfinder/sequences.nin
file: /Users/nosi/opt/anaconda3/envs/abricate/db/resfinder/sequences.nhr
file: /Users/nosi/opt/anaconda3/envs/abricate/db/resfinder/sequences.nsq
file: /Users/nosi/opt/anaconda3/envs/abricate/db/resfinder/sequences.nsi
file: /Users/nosi/opt/anaconda3/envs/abricate/db/resfinder/sequences.nsd
file: /Users/nosi/opt/anaconda3/envs/abricate/db/resfinder/sequences.nhi
file: /Users/nosi/opt/anaconda3/envs/abricate/db/resfinder/sequences.nhd
file: /Users/nosi/opt/anaconda3/envs/abricate/db/resfinder/sequences.nog

BLAST Database creation error: Error: Duplicate seq_ids are found:
LCL|RESFINDER~~~_~~~

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