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I had a lot of issues installing bcftools using conda, getting [this error] when running bcftools , so I'm assuming this is the same issue.
To resolve it I installed bcftools from scratch following: https://samtools.github.io/bcftools/howtos/install.html and then replaced the conda-env/bin/bcftools with a link to the executable generated by the make command.
After that it ran smoothly. Hope this helps!
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