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Mesoscale Activity Project Pipeline

Mesoscale Activity Project Pipeline - map-ephys

Documentation

Visit here for full documentation of this project

The MAP Navigator

A website dedicated for data browsing and results visualization for MAP project can be accessed at https://navigator.mesoscale-activity-map.org/

Access via Jupyter Hub

A MAP-dedicated Jupyter Hub can be accessed at https://jupyter.mesoscale-activity-map.org/

Users can sign in using their GitHub account. Please contact [email protected] for database credential if you don't already have one.

Once signed in, the foler /work is dedicated for each user to freely experiment with the pipeline. Guidelines, tutorial materials, example notebooks can be found under /workshop or /map-ephys/notebook

Local Installation and Setup

Direct installation without a source checkout can be done directly via pip:

$ pip install git+https://github.com/mesoscale-activity-map/map-ephys/

Regular users who will be using the code for querying/analysis should checkout the source code from git and install the package using pythons's pip command. For example:

$ git clone https://github.com/mesoscale-activity-map/map-ephys.git
$ cd map-ephys
$ pip install -e .

This will make the MAP pipeline modules available to your python interpreter as 'pipeline'.

For more details on system setup and administration, visit here