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defaultCNVthreshold.json
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/
defaultCNVthreshold.json
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{
"TCGA Pan-Cancer (PANCAN)": {
"amp": 0.3,
"del": -0.2
},
"TCGA Breast Cancer (BRCA)": {
"amp": 0.25,
"del": -0.15
},
"TCGA Acute Myeloid Leukemia (LAML)": {
"amp": 0.35,
"del": -0.2
},
"TCGA Adrenocortical Cancer (ACC)":{
"amp": 0.4,
"del": -0.15
},
"TCGA Bile Duct Cancer (CHOL)": {
"amp": 0.35,
"del": -0.2
},
"TCGA Bladder Cancer (BLCA)": {
"amp": 0.35,
"del": -0.15
},
"TCGA Cervical Cancer (CESC)": {
"amp": 0.25,
"del": -0.15
},
"TCGA Colon and Rectal Cancer (COADREAD)": {
"amp": 0.3,
"del": -0.25
},
"TCGA Colon Cancer (COAD)": {
"amp": 0.3,
"del": -0.25
},
"TCGA Endometrioid Cancer (UCEC)": {
"amp": 0.37,
"del": -0.2
},
"TCGA Esophageal Cancer (ESCA)": {
"amp": 0.35,
"del": -0.2
},
"TCGA Glioblastoma (GBM)": {
"amp": 0.35,
"del": -0.2
},
"TCGA Head and Neck Cancer (HNSC)": {
"amp": 0.35,
"del": -0.25
},
"TCGA Kidney Chromophobe (KICH)": {
"amp": 0.3,
"del": -0.15
},
"TCGA Kidney Clear Cell Carcinoma (KIRC)": {
"amp": 0.2,
"del": -0.25
},
"TCGA Kidney Papillary Cell Carcinoma (KIRP)": {
"amp": 0.25,
"del": -0.2
},
"TCGA Large B-cell Lymphoma (DLBC)": {
"amp": 0.2,
"del": -0.25
},
"TCGA Liver Cancer (LIHC)": {
"amp": 0.3,
"del": -0.3
},
"TCGA Lower Grade Glioma (LGG)": {
"amp": 0.35,
"del": -0.25
},
"TCGA lower grade glioma and glioblastoma (GBMLGG)": {
"amp": 0.3,
"del": -0.25
},
"TCGA Lung Adenocarcinoma (LUAD)": {
"amp": 0.35,
"del": -0.15
},
"TCGA Lung Cancer (LUNG)": {
"amp": 0.35,
"del": -0.15
},
"TCGA Lung Squamous Cell Carcinoma (LUSC)": {
"amp": 0.35,
"del": -0.15
},
"TCGA Melanoma (SKCM)": {
"amp": 0.45,
"del": -0.25
},
"TCGA Mesothelioma (MESO)": {
"amp": 0.35,
"del": -0.15
},
"TCGA Ocular melanomas (UVM)": {
"amp": 0.25,
"del": -0.25
},
"TCGA Ovarian Cancer (OV)": {
"amp": 0.4,
"del": -0.2
},
"TCGA Pancreatic Cancer (PAAD)": {
"amp": 0.35,
"del": -0.1
},
"TCGA Pheochromocytoma & Paraganglioma (PCPG)": {
"amp": 0.35,
"del": -0.15
},
"TCGA Prostate Cancer (PRAD)": {
"amp": 0.2,
"del": -0.2
},
"TCGA Rectal Cancer (READ)": {
"amp": 0.5,
"del": -0.2
},
"TCGA Sarcoma (SARC)": {
"amp": 0.5,
"del": -0.2
},
"TCGA Stomach Cancer (STAD)": {
"amp": 0.2,
"del": -0.2
},
"TCGA Testicular Cancer (TGCT)": {
"amp": 0.75,
"del": -0.15
},
"TCGA Thymoma (THYM)": {
"amp": 0.25,
"del": -0.2
},
"TCGA Thyroid Cancer (THCA)": {
"amp": 0.2,
"del": -0.2
},
"TCGA Uterine Carcinosarcoma (UCS)": {
"amp": 0.5,
"del": -0.2
}
}