Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Python interface #60

Open
pdiakumis opened this issue May 2, 2023 · 0 comments
Open

Python interface #60

pdiakumis opened this issue May 2, 2023 · 0 comments
Assignees
Labels
exploration 🔍 Exploration

Comments

@pdiakumis
Copy link
Member

As a conda app, dracarys is flexible enough to use any conda pkgs available like bcftools, bedtools, cyvcf2 etc., along with R pkgs from CRAN/Bioconductor and Python pkgs from PyPI.
We can explore enhancing its current Python interface (setup.py/setup.cfg/dracarys/ are already available) and use reticulate (https://rstudio.github.io/reticulate/) to connect with R.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
exploration 🔍 Exploration
Projects
None yet
Development

No branches or pull requests

1 participant