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FR: cleanup for manuscript #915

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4 of 22 tasks
Maarten-vd-Sande opened this issue Nov 17, 2022 · 0 comments
Open
4 of 22 tasks

FR: cleanup for manuscript #915

Maarten-vd-Sande opened this issue Nov 17, 2022 · 0 comments
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@Maarten-vd-Sande @siebrenf
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enhancement New feature or request

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Maarten-vd-Sande commented Nov 17, 2022 •
edited by siebrenf
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  • samples & config cleanup
    • download
    • alignment
    • rna
    • atac
    • chip
    • scrna
      • why kallistobus options inside quotes?
    • scatac
  • example multiqc per workflow
  • example trackhub
  • single cell rna-seq dag should have some of its export functions available?
  • documentation cleanup
    • download
    • alignment
    • rna
    • atac
    • chip
    • scrna
      • DAG is too oversimplified?
    • scatac
  • update snakemake (rerunning 😬 )
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@Maarten-vd-Sande @siebrenf