Simulate sequences from branch specific omega values

[sophie-03]

Hello,

Is it possible to use hyphy to simulate sequences at the tips of a phylogenetic tree? I have a tree, and omega values for each branch of the tree - is it possible to use these branch specific omega values to simulate sequences? If so, would you be able to advise me or could you direct me towards the documentation that can help me achieve this?

Thank you in advance.

[spond]

Dear @sophie-03,

I would use https://github.com/veg/hyphy-analyses/tree/master/SimulateMG94

How are the omega values specified?

Best,
Sergei