Tutorial

[kyleLesack]

Hello,

The README mentions that you will be adding a tutorial soon. Are you still planning on adding one? I'd like to try your strategy myself for a few gene families I am interested in.

Thanks

[stroehleina]

Hi Kyle,
I have updated the documentation within the scripts, but currently am not working on a dedicated tutorial. The pipeline/strategy has been published in a paper (https://www.nature.com/articles/s41598-018-25020-8). Not sure if you have seen this, it might be helpful. In the meantime, if you have any specific questions feel free to contact me and I will be happy to assist. Do your gene families have conserved domains?

[kyleLesack]

Thanks for the quick response! Yes, I found this repo after reading your paper. The paper seems very detailed, so I think that I should be able to work out the steps involved in the pipeline. Since, a tutorial was mentioned in the README, I just wanted to check on that before I start. I'll be sure to contact you if I encounter any problems.

The families that I am interested all have domains listed in NCBI's conserved domain database.

https://www.ncbi.nlm.nih.gov/cdd/