Skip to content

Issues: vgteam/sequenceTubeMap

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

82 Open 177 Closed
82 Open 177 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

How can I customize colors for distinct groups based on my specific preferences?
#463 opened Nov 21, 2024 by GooLey1025
Re-take help screenshots
#461 opened Oct 16, 2024 by adamnovak
Automatic node flipping not working on HPRC subgraphs
#457 opened Sep 4, 2024 by adamnovak
Make ITCR September 16 slide on how to install Tube Map and use with Lancet
#455 opened Aug 14, 2024 by adamnovak
@adamnovak
1
Bundle tube map for easy installation into an executable or tarball
#453 opened Aug 14, 2024 by adamnovak
@adamnovak
4
How to interpret variation graphs in SequenceTubeMap
#450 opened Jun 18, 2024 by gforg34
Off by 1 error on end position bounds check
#449 opened Jun 14, 2024 by adamnovak
1
Graph can be entirely out of the image bounds in a downloaded image
#448 opened Jun 14, 2024 by adamnovak
Visualizing a graph from short sequences
#446 opened Jun 1, 2024 by pbreeder
2
Reads aren't clickable within nodes
#430 opened May 7, 2024 by adamnovak
Better handling of the case where vg is not installed
#424 opened Apr 16, 2024 by adamnovak
Reads can become oddly wide
#419 opened Apr 9, 2024 by adamnovak
Tips of reads can overlap in X by fractions of a base
#418 opened Apr 9, 2024 by adamnovak
@adamnovak @shreyasun
3
Support GAF alignment files
#417 opened Apr 9, 2024 by adamnovak
2
Add remote URL support to GBZBase backend
#416 opened Apr 9, 2024 by adamnovak
Add read support to GBZBase backend
#415 opened Apr 9, 2024 by adamnovak
HPRC Draft Pangenome Graphs fail to load
#413 opened Apr 2, 2024 by adadiehl
1
vg chunk failed
#411 opened Mar 22, 2024 by this-is-Mayank
5
Move data source up to App so it can be set to "custom" when we set the API mode to local
#408 opened Mar 13, 2024 by adamnovak
Snap to grid for reads moving between nodes to make it more tube-map-y
#407 opened Mar 13, 2024 by adamnovak
Custom data
#401 opened Mar 12, 2024 by lalalagartija
3
How to get the vg file could as input file for sequenceTubeMap
#388 opened Jan 24, 2024 by ld9866
2
Implement GBZ database backend
#367 opened Nov 20, 2023 by adamnovak
@adamnovak
2
Stop TubeMapContainer from racing different updates or re-rendering with old data and new color schemes
#357 opened Oct 18, 2023 by adamnovak
vg chunk failed: GBWT::load(): Invalid heade
#347 opened Oct 9, 2023 by gaochenx
2
ProTip! Type g i on any issue or pull request to go back to the issue listing page.