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Commits on Jun 15, 2024

• Merge pull request #9 from vistalab-technion/unmodelled-res-collection-issues

  Show description for a2f0ae7
  avivrosenberg

  authored
  a2f0ae7

• ResidueContacts: bugfix for residues without any in-chain contacts

  avivrosenberg

  committed
  d11aed5

• prec: Handle unknown residues in canonical sequence

  avivrosenberg

  committed
  2712b59

Commits on Jun 13, 2024

• Merge pull request #5 from vistalab-technion/seq-align-missing-residues-fix

  Show description for abb854e
  avivrosenberg

  authored
  abb854e

• collect-prec: add number of unmodelled residues as metadata columns

  avivrosenberg

  committed
  7ec2019

• prec: count number of unmodelled residues

  avivrosenberg

  committed
  d31b0ac

Commits on Jun 2, 2024

• pairwise_alignment_map: Update to choose alignment with smallest number of gaps

  avivrosenberg

  committed
  9e06d37

• prec: Improve test for structures with unmodelled residues

  avivrosenberg

  committed
  f2b0399

• prec: Add test for structures with unmodelled residues

  avivrosenberg

  committed
  e85cdfe

• prec: Refactor AA sequence property

  avivrosenberg

  committed
  402db93

• prec: assign separate index for unmodelled residues

  Show description for 8bd4d6a
  avivrosenberg

  committed
  8bd4d6a

• prec: fix wrong assignment of indices for unmodeled residues

  avivrosenberg

  committed
  9d9763a

• prec: update unmodeled residue icode

  avivrosenberg

  committed
  bec4f39

• prec: clean up missing residue detection

  avivrosenberg

  committed
  af10143

• WIP

  avivrosenberg

  committed
  626bc2f

• prec: missing residue detection now based on alignment to canonical PDB sequence

  avivrosenberg

  committed
  d891dd4

• pairwise_alignment_map: move logic out of prec and into pp5.align

  avivrosenberg

  committed
  7f5c4f5

• Merge pull request #8 from vistalab-technion/pytest8-fix-fixtures

  Show description for 9e9d018
  avivrosenberg

  authored
  9e9d018

• test_unp.py: update to use fixtures (pytest 8 compatibility)

  avivrosenberg

  committed
  0544004

• test_pdb.py: update to use fixtures (pytest 8 compatibility)

  avivrosenberg

  committed
  c924626

Commits on May 28, 2024

• Merge pull request #7 from vistalab-technion/contacts-missing-residue-bugfix

  Show description for 59be0e0
  avivrosenberg

  authored
  59be0e0

• prec: add test case with missing residues

  avivrosenberg

  committed
  7efbecd

• collect: fix issue with un-modelled residues

  avivrosenberg

  committed
  efe1053

Commits on May 27, 2024

• Merge pull request #6 from vistalab-technion/better-contact-agg

  Show description for 7aa10a0
  avivrosenberg

  authored
  7aa10a0

Commits on May 26, 2024

• Merge pull request #4 from vistalab-technion/pdb-api-headers

  Show description for 0815982
  avivrosenberg

  authored
  0815982

• prec: support atom-level contacts

  avivrosenberg

  committed
  c4d5166

• contacts: Allow saving all atom-level contacts in neighbor-based contact assignment

  avivrosenberg

  committed
  5a5d15a

• contacts: Cleanup neighbor-based contact assignment

  avivrosenberg

  committed
  d69f767

• contacts: Refactor neighbor-based contact assignment and aggregation

  avivrosenberg

  committed
  19a680a

• pdb_api: Fix new API errors due to missing headers

  avivrosenberg

  committed
  e00b93c

• contacts: WIP

  avivrosenberg

  committed
  e2aa998

• contacts: Change aggregation to min-dist

  avivrosenberg

  committed
  3cba0be

Commits on Apr 9, 2024

• Update README

  avivrosenberg

  authored
  3f16d87

Commits on Apr 8, 2024

• Update README

  avivrosenberg

  committed
  ad1bedd

• update collection script

  avivrosenberg

  committed
  bbf2766

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