GitHub - w2sg-arnav/stanford_hacks: Stanford Biohacks

Stanford Biohacks along with Harshal Mahale, Aarian Thakur and Tania VIthayathil. Mentored by Stanford iGEM team and Dr. Kenneth Fischbeck

Name		Name	Last commit message	Last commit date
Latest commit History 15 Commits
accuracy		accuracy
curve		curve
final and best approach		final and best approach
plasma		plasma
serum		serum
.gitignore		.gitignore
Plasma Accuracy DecisionTreeClassifier.csv		Plasma Accuracy DecisionTreeClassifier.csv
Plasma Accuracy GaussianNB.csv		Plasma Accuracy GaussianNB.csv
Plasma Accuracy RF.csv		Plasma Accuracy RF.csv
Plasma Accuracy Ridge.csv		Plasma Accuracy Ridge.csv
Plasma Accuracy SVC.csv		Plasma Accuracy SVC.csv
Plasma Accuracy XGB.csv		Plasma Accuracy XGB.csv
Plasma Accuracy.csv		Plasma Accuracy.csv
Plasma RFECV Accuracy Plot DecisionTreeClassifier.png		Plasma RFECV Accuracy Plot DecisionTreeClassifier.png
Plasma RFECV Accuracy Plot GaussianNB.png		Plasma RFECV Accuracy Plot GaussianNB.png
Plasma RFECV Accuracy Plot RF.png		Plasma RFECV Accuracy Plot RF.png
Plasma RFECV Accuracy Plot Ridge.png		Plasma RFECV Accuracy Plot Ridge.png
Plasma RFECV Accuracy Plot SVC.png		Plasma RFECV Accuracy Plot SVC.png
Plasma RFECV Accuracy Plot XGB.png		Plasma RFECV Accuracy Plot XGB.png
README.md		README.md
Serum Accuracy DecisionTreeClassifier.csv		Serum Accuracy DecisionTreeClassifier.csv
Serum Accuracy GaussianNB.csv		Serum Accuracy GaussianNB.csv
Serum Accuracy RandomForestClassifier.csv		Serum Accuracy RandomForestClassifier.csv
Serum Accuracy RidgeClassifier.csv		Serum Accuracy RidgeClassifier.csv
Serum Accuracy SVC.csv		Serum Accuracy SVC.csv
Serum Accuracy.csv		Serum Accuracy.csv
Serum RFECV Accuracy Plot DecisionTreeClassifier.png		Serum RFECV Accuracy Plot DecisionTreeClassifier.png
Serum RFECV Accuracy Plot GaussianNB.png		Serum RFECV Accuracy Plot GaussianNB.png
Serum RFECV Accuracy Plot RandomForestClassifier.png		Serum RFECV Accuracy Plot RandomForestClassifier.png
Serum RFECV Accuracy Plot RidgeClassifier.png		Serum RFECV Accuracy Plot RidgeClassifier.png
Serum RFECV Accuracy Plot SVC.png		Serum RFECV Accuracy Plot SVC.png
Serum RFECV Accuracy Plot XGB.png		Serum RFECV Accuracy Plot XGB.png
annotate.io		annotate.io
clustermap_serum_2.png		clustermap_serum_2.png
cm_plasma.jpg		cm_plasma.jpg
cm_serum.jpg		cm_serum.jpg
control_1_5-anhydroglucitol.JPG		control_1_5-anhydroglucitol.JPG
control_1_5-anhydroglucitol_qqplot.JPG		control_1_5-anhydroglucitol_qqplot.JPG
disease_1_5-anhydroglucitol.JPG		disease_1_5-anhydroglucitol.JPG
disease_1_5-anhydroglucitol_qqplot.JPG		disease_1_5-anhydroglucitol_qqplot.JPG
exploratory_analysis3.ipynb		exploratory_analysis3.ipynb
exploratory_analysis_plasma.ipynb		exploratory_analysis_plasma.ipynb
exploratory_analysis_serum.ipynb		exploratory_analysis_serum.ipynb
fip_plasma.jpg		fip_plasma.jpg
fip_serum.jpg		fip_serum.jpg
full_final_RFE_rf.ipynb		full_final_RFE_rf.ipynb
full_final_RFE_rf_extended.ipynb		full_final_RFE_rf_extended.ipynb
importance.PNG		importance.PNG
importance3.PNG		importance3.PNG
pca10.csv		pca10.csv
pca15.csv		pca15.csv
pca2.csv		pca2.csv
pca20.csv		pca20.csv
pca3.csv		pca3.csv
pca4.csv		pca4.csv
pca5.csv		pca5.csv
plasma(Specific Metabolics)_final2.csv		plasma(Specific Metabolics)_final2.csv
plasma(Specific Metabolics)_rfecv19.csv		plasma(Specific Metabolics)_rfecv19.csv
plasma_processed.csv		plasma_processed.csv
plasma_serum_raw_accuracy.ipynb		plasma_serum_raw_accuracy.ipynb
plasma_serum_raw_final.ipynb		plasma_serum_raw_final.ipynb
plasma_test_final.ipynb		plasma_test_final.ipynb
plusmaLC.csv		plusmaLC.csv
rfe_Plasma.jpg		rfe_Plasma.jpg
rfe_Plasma_annotated.png		rfe_Plasma_annotated.png
rfe_Serum.jpg		rfe_Serum.jpg
rfe_Serum_annotated.png		rfe_Serum_annotated.png
serum(Specific Metabolics).csv		serum(Specific Metabolics).csv
serum(Specific Metabolics)3.csv		serum(Specific Metabolics)3.csv
serum(Specific Metabolics)_0.001.csv		serum(Specific Metabolics)_0.001.csv
serum(Specific Metabolics)_final2.csv		serum(Specific Metabolics)_final2.csv
serum(Specific Metabolics)_rfecv7.csv		serum(Specific Metabolics)_rfecv7.csv
serumLC.csv		serumLC.csv
serum_plasma-checkpoint.ipynb		serum_plasma-checkpoint.ipynb
serum_plasma_utshab-checkpoint.ipynb		serum_plasma_utshab-checkpoint.ipynb
serum_processed.csv		serum_processed.csv
serum_test-checkpoint.ipynb		serum_test-checkpoint.ipynb
serum_test.ipynb		serum_test.ipynb
serum_test3.ipynb		serum_test3.ipynb
serum_test_0.001.ipynb		serum_test_0.001.ipynb
serum_test_final_16.ipynb		serum_test_final_16.ipynb
specific_metabolics_accuracy.ipynb		specific_metabolics_accuracy.ipynb
specific_metabolics_accuracy_0.001.ipynb		specific_metabolics_accuracy_0.001.ipynb
specific_metabolics_accuracy_3.ipynb		specific_metabolics_accuracy_3.ipynb
test_serum.csv		test_serum.csv
test_serum3.csv		test_serum3.csv
tsne2.csv		tsne2.csv
tsne3.csv		tsne3.csv
visualizations.ipynb		visualizations.ipynb

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