diff --git a/DESCRIPTION b/DESCRIPTION index 500df59..025e440 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: MicrobiomeBenchmarkDataAnalyses Title: Benchmarking analyses with the MicrobiomeBenchmarkData package -Version: 0.99.13 +Version: 0.99.14 Authors@R: person("Samuel David", "Gamboa-Tuz", email = "Samuel.Gamboa.Tuz@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-6863-7943")) diff --git a/vignettes/articles/Figure5.pdf b/vignettes/articles/Figure5.pdf index 13ca861..c2f1fbd 100644 Binary files a/vignettes/articles/Figure5.pdf and b/vignettes/articles/Figure5.pdf differ diff --git a/vignettes/articles/Stammler_2016_16S_spikein.Rmd b/vignettes/articles/Stammler_2016_16S_spikein.Rmd index acbf67a..5494978 100644 --- a/vignettes/articles/Stammler_2016_16S_spikein.Rmd +++ b/vignettes/articles/Stammler_2016_16S_spikein.Rmd @@ -312,21 +312,21 @@ plts_1 <- ggarrange( ``` -```{r, fig.width=11, fig.height=5.5} -plts_1 +```{r, fig.width=6, fig.height=5} +p_a ``` ```{r, echo=FALSE, eval=FALSE,} ggsave( - filename = "Figure5.pdf", plot = plts_1, - width = 11, height = 5.5, dpi = 150 + filename = "Figure5.pdf", plot = p_a, + width = 6, height = 5, dpi = 300 ) ``` -```{r, fig.width=11, fig.height=8} +```{r, fig.width=10, fig.height=5} hexFun <- function(myDat, xvar, yvar) { xvar <- enquo(xvar) yvar <- enquo(yvar) @@ -373,9 +373,9 @@ p4 <- hexFun(dat, gmn_mean, gmn_ranking) + # mapping = aes(label = feature_label) # ) plts <- ggarrange( - plotlist = list(p1, p2, p3, p4), - labels = c("A", "B", "C", "D"), - ncol = 2, nrow = 2 + plotlist = list(p3, p4), + labels = c("A", "B"), + nrow = 1 ) plts ``` @@ -383,11 +383,10 @@ plts ```{r, echo=FALSE, eval=FALSE} ggsave( filename = "Supplementary_Figure_S1.pdf", plot = plts, - width = 11, height = 8, dpi = 150 + width = 10, height = 4, dpi = 300 ) ``` - # Conclusion TSS normalizaion has lower CV values than GMN. diff --git a/vignettes/articles/Supplementary_Figure_S1.pdf b/vignettes/articles/Supplementary_Figure_S1.pdf index 56ff82e..c1e00a1 100644 Binary files a/vignettes/articles/Supplementary_Figure_S1.pdf and b/vignettes/articles/Supplementary_Figure_S1.pdf differ