diff --git a/articles/MultiAssayExperiment_Analysis.html b/articles/MultiAssayExperiment_Analysis.html
index 446b984..1876b88 100644
--- a/articles/MultiAssayExperiment_Analysis.html
+++ b/articles/MultiAssayExperiment_Analysis.html
@@ -109,7 +109,7 @@
Marcel
NY
Levi
Waldron
- CUNY School of Public Health, New York, NY
September 20, 2023
+ CUNY School of Public Health, New York, NY
September 26, 2023
Source: vignettes/MultiAssayExperiment_Analysis.Rmd
MultiAssayExperiment_Analysis.Rmd
diff --git a/articles/Ramos_MultiAssayExperiment.html b/articles/Ramos_MultiAssayExperiment.html
index e417fe1..1127413 100644
--- a/articles/Ramos_MultiAssayExperiment.html
+++ b/articles/Ramos_MultiAssayExperiment.html
@@ -109,7 +109,7 @@ Marcel
NY
Levi
Waldron
- CUNY School of Public Health, New York, NY
September 20, 2023
+ CUNY School of Public Health, New York, NY
September 26, 2023
Source: vignettes/Ramos_MultiAssayExperiment.Rmd
Ramos_MultiAssayExperiment.Rmd
@@ -1270,8 +1270,8 @@
## [2] ACC_miRNASeqGene-20160128: SummarizedExperiment with 1046 rows and 80 columns
## [3] ACC_Mutation-20160128: RaggedExperiment with 20166 rows and 90 columns
## [4] ACC_RPPAArray-20160128: SummarizedExperiment with 192 rows and 46 columns
-## [5] ACC_RNASeq2GeneNorm-20160128_ranged: RangedSummarizedExperiment with 17030 rows and 79 columns
-## [6] ACC_RNASeq2GeneNorm-20160128_unranged: SummarizedExperiment with 3471 rows and 79 columns
+## [5] ACC_RNASeq2GeneNorm-20160128_ranged: RangedSummarizedExperiment with 16991 rows and 79 columns
+## [6] ACC_RNASeq2GeneNorm-20160128_unranged: SummarizedExperiment with 3510 rows and 79 columns
## Functionality:
## experiments() - obtain the ExperimentList instance
## colData() - the primary/phenotype DataFrame
@@ -1329,8 +1329,8 @@
## [3] ACC_CNVSNP-20160128_simplified: RangedSummarizedExperiment with 22913 rows and 180 columns
## [4] ACC_miRNASeqGene-20160128_ranged: RangedSummarizedExperiment with 1002 rows and 80 columns
## [5] ACC_miRNASeqGene-20160128_unranged: SummarizedExperiment with 44 rows and 80 columns
-## [6] ACC_RNASeq2GeneNorm-20160128_ranged: RangedSummarizedExperiment with 17030 rows and 79 columns
-## [7] ACC_RNASeq2GeneNorm-20160128_unranged: SummarizedExperiment with 3471 rows and 79 columns
+## [6] ACC_RNASeq2GeneNorm-20160128_ranged: RangedSummarizedExperiment with 16991 rows and 79 columns
+## [7] ACC_RNASeq2GeneNorm-20160128_unranged: SummarizedExperiment with 3510 rows and 79 columns
## Functionality:
## experiments() - obtain the ExperimentList instance
## colData() - the primary/phenotype DataFrame
diff --git a/articles/cBioPortal_Studies.html b/articles/cBioPortal_Studies.html
index 75baffc..a9bbc92 100644
--- a/articles/cBioPortal_Studies.html
+++ b/articles/cBioPortal_Studies.html
@@ -16723,53 +16723,6 @@ cBioPortalData() && cBioDataPack()<
-BM NSCLC (MSK, 2023)
- |
-
-Targeted sequencing of 332 BM NSCLC tumor/normal pairs via MSK-IMPACT
-platform.
- |
-
-TRUE
- |
-
- |
-
-0
- |
-
-2023-08-08 08:16:07
- |
-
-332
- |
-
-TRUE
- |
-
-bm_nsclc_mskcc_2023
- |
-
-nsclc
- |
-
-hg19
- |
-
-NA
- |
-
-NA
- |
-
-NA
- |
-
-NA
- |
-
-
-
Colorectal Adenocarcinoma (MSK, Nat Commun 2022)
|
@@ -19143,6 +19096,52 @@ cBioPortalData() && cBioDataPack()<
NA
|
+
+
+BM NSCLC (MSK, 2023)
+ |
+
+Targeted sequencing of 322 BM NSCLC tumor/normal pairs via MSK-IMPACT.
+ |
+
+TRUE
+ |
+
+ |
+
+0
+ |
+
+2023-09-23 08:22:12
+ |
+
+322
+ |
+
+TRUE
+ |
+
+bm_nsclc_mskcc_2023
+ |
+
+nsclc
+ |
+
+hg19
+ |
+
+37591896
+ |
+
+Anna et al. Nat Commun 2023
+ |
+
+NA
+ |
+
+NA
+ |
+
diff --git a/pkgdown.yml b/pkgdown.yml
index c9bc35e..fd35e25 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -7,7 +7,7 @@ articles:
TCGAutilsCheatsheet: TCGAutilsCheatsheet.html
cBioPortal_Studies: cBioPortal_Studies.html
curatedTCGAData_ref: curatedTCGAData_ref.html
-last_built: 2023-09-20T13:10Z
+last_built: 2023-09-26T15:58Z
urls:
reference: https://waldronlab.io/MultiAssayWorkshop/reference
article: https://waldronlab.io/MultiAssayWorkshop/articles