diff --git a/articles/MultiAssayExperiment_Analysis.html b/articles/MultiAssayExperiment_Analysis.html index 446b984..1876b88 100644 --- a/articles/MultiAssayExperiment_Analysis.html +++ b/articles/MultiAssayExperiment_Analysis.html @@ -109,7 +109,7 @@

Marcel NY

Levi Waldron

- CUNY School of Public Health, New York, NY

September 20, 2023

+ CUNY School of Public Health, New York, NY

September 26, 2023

Source: vignettes/MultiAssayExperiment_Analysis.Rmd diff --git a/articles/Ramos_MultiAssayExperiment.html b/articles/Ramos_MultiAssayExperiment.html index e417fe1..1127413 100644 --- a/articles/Ramos_MultiAssayExperiment.html +++ b/articles/Ramos_MultiAssayExperiment.html @@ -109,7 +109,7 @@

Marcel NY

Levi Waldron

- CUNY School of Public Health, New York, NY

September 20, 2023

+ CUNY School of Public Health, New York, NY

September 26, 2023

Source: vignettes/Ramos_MultiAssayExperiment.Rmd @@ -1270,8 +1270,8 @@
## [2] ACC_miRNASeqGene-20160128: SummarizedExperiment with 1046 rows and 80 columns ## [3] ACC_Mutation-20160128: RaggedExperiment with 20166 rows and 90 columns ## [4] ACC_RPPAArray-20160128: SummarizedExperiment with 192 rows and 46 columns -## [5] ACC_RNASeq2GeneNorm-20160128_ranged: RangedSummarizedExperiment with 17030 rows and 79 columns -## [6] ACC_RNASeq2GeneNorm-20160128_unranged: SummarizedExperiment with 3471 rows and 79 columns +## [5] ACC_RNASeq2GeneNorm-20160128_ranged: RangedSummarizedExperiment with 16991 rows and 79 columns +## [6] ACC_RNASeq2GeneNorm-20160128_unranged: SummarizedExperiment with 3510 rows and 79 columns ## Functionality: ## experiments() - obtain the ExperimentList instance ## colData() - the primary/phenotype DataFrame @@ -1329,8 +1329,8 @@
## [3] ACC_CNVSNP-20160128_simplified: RangedSummarizedExperiment with 22913 rows and 180 columns ## [4] ACC_miRNASeqGene-20160128_ranged: RangedSummarizedExperiment with 1002 rows and 80 columns ## [5] ACC_miRNASeqGene-20160128_unranged: SummarizedExperiment with 44 rows and 80 columns -## [6] ACC_RNASeq2GeneNorm-20160128_ranged: RangedSummarizedExperiment with 17030 rows and 79 columns -## [7] ACC_RNASeq2GeneNorm-20160128_unranged: SummarizedExperiment with 3471 rows and 79 columns +## [6] ACC_RNASeq2GeneNorm-20160128_ranged: RangedSummarizedExperiment with 16991 rows and 79 columns +## [7] ACC_RNASeq2GeneNorm-20160128_unranged: SummarizedExperiment with 3510 rows and 79 columns ## Functionality: ## experiments() - obtain the ExperimentList instance ## colData() - the primary/phenotype DataFrame diff --git a/articles/cBioPortal_Studies.html b/articles/cBioPortal_Studies.html index 75baffc..a9bbc92 100644 --- a/articles/cBioPortal_Studies.html +++ b/articles/cBioPortal_Studies.html @@ -16723,53 +16723,6 @@

cBioPortalData() && cBioDataPack()< -BM NSCLC (MSK, 2023) - - -Targeted sequencing of 332 BM NSCLC tumor/normal pairs via MSK-IMPACT -platform. - - -TRUE - - - - -0 - - -2023-08-08 08:16:07 - - -332 - - -TRUE - - -bm_nsclc_mskcc_2023 - - -nsclc - - -hg19 - - -NA - - -NA - - -NA - - -NA - - - - Colorectal Adenocarcinoma (MSK, Nat Commun 2022) @@ -19143,6 +19096,52 @@

cBioPortalData() && cBioDataPack()< NA + + +BM NSCLC (MSK, 2023) + + +Targeted sequencing of 322 BM NSCLC tumor/normal pairs via MSK-IMPACT. + + +TRUE + + + + +0 + + +2023-09-23 08:22:12 + + +322 + + +TRUE + + +bm_nsclc_mskcc_2023 + + +nsclc + + +hg19 + + +37591896 + + +Anna et al. Nat Commun 2023 + + +NA + + +NA + +
diff --git a/pkgdown.yml b/pkgdown.yml index c9bc35e..fd35e25 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -7,7 +7,7 @@ articles: TCGAutilsCheatsheet: TCGAutilsCheatsheet.html cBioPortal_Studies: cBioPortal_Studies.html curatedTCGAData_ref: curatedTCGAData_ref.html -last_built: 2023-09-20T13:10Z +last_built: 2023-09-26T15:58Z urls: reference: https://waldronlab.io/MultiAssayWorkshop/reference article: https://waldronlab.io/MultiAssayWorkshop/articles