diff --git a/articles/attributes.html b/articles/attributes.html index 35957149..d760d496 100644 --- a/articles/attributes.html +++ b/articles/attributes.html @@ -99,22 +99,22 @@

Sources and Attributes

Sources

The 17 sources of annotations in bugphyzz:

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- +
+

Attributes

Definition of attributes and attribute values. Ontology terms can be searched at OSLv3 and OSLv4.

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- +
+

Sources x Attributes

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- +
+

Session info diff --git a/pkgdown.yml b/pkgdown.yml index 48a0bbfd..c1b3606b 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -4,7 +4,7 @@ pkgdown_sha: ~ articles: attributes: attributes.html bugphyzz: bugphyzz.html -last_built: 2024-03-22T19:39Z +last_built: 2024-03-22T19:58Z urls: reference: https://waldronlab.io/bugphyzz/reference article: https://waldronlab.io/bugphyzz/articles diff --git a/reference/getTaxonSignatures.html b/reference/getTaxonSignatures.html index df7f0591..746dcd89 100644 --- a/reference/getTaxonSignatures.html +++ b/reference/getTaxonSignatures.html @@ -102,13 +102,13 @@

Examples

bp <- importBugphyzz() #> Importing multistate data... #> Downloading, bugphyzz_multistate.tsv. -#> Using data downloaded on 2024-03-22 19:39:49. +#> Using data downloaded on 2024-03-22 19:58:15. #> Importing binary data... #> Downloading, bugphyzz_binary.tsv. -#> Using data downloaded on 2024-03-22 19:40:00. +#> Using data downloaded on 2024-03-22 19:58:25. #> Importing numeric data... #> Downloading, bugphyzz_numeric.tsv. -#> Using data downloaded on 2024-03-22 19:40:03. +#> Using data downloaded on 2024-03-22 19:58:27. sig_names_1 <- getTaxonSignatures(taxid, bp) sig_names_2 <- getTaxonSignatures(taxonName, bp, tax_id_type = "Taxon_name") diff --git a/reference/importBugphyzz.html b/reference/importBugphyzz.html index f71425b0..e326cc30 100644 --- a/reference/importBugphyzz.html +++ b/reference/importBugphyzz.html @@ -150,11 +150,11 @@

Examples


 bp <- importBugphyzz()
 #> Importing multistate data...
-#> Using data downloaded on 2024-03-22 19:39:49.
+#> Using data downloaded on 2024-03-22 19:58:15.
 #> Importing binary data...
-#> Using data downloaded on 2024-03-22 19:40:00.
+#> Using data downloaded on 2024-03-22 19:58:25.
 #> Importing numeric data...
-#> Using data downloaded on 2024-03-22 19:40:03.
+#> Using data downloaded on 2024-03-22 19:58:27.
 names(bp)
 #>  [1] "aerophilicity"                        
 #>  [2] "antimicrobial resistance"             
diff --git a/reference/makeSignatures.html b/reference/makeSignatures.html
index a2b86c63..2e4f129c 100644
--- a/reference/makeSignatures.html
+++ b/reference/makeSignatures.html
@@ -135,11 +135,11 @@ 
Examples

     

 bp <- importBugphyzz()
 #> Importing multistate data...
-#> Using data downloaded on 2024-03-22 19:39:49.
+#> Using data downloaded on 2024-03-22 19:58:15.
 #> Importing binary data...
-#> Using data downloaded on 2024-03-22 19:40:00.
+#> Using data downloaded on 2024-03-22 19:58:25.
 #> Importing numeric data...
-#> Using data downloaded on 2024-03-22 19:40:03.
+#> Using data downloaded on 2024-03-22 19:58:27.
 sigs <- purrr::map(bp, makeSignatures)
 sigs <- purrr::list_flatten(sigs, name_spec = "{inner}")