From 7aaac84e15c3438b701e44f3403116c6d500e001 Mon Sep 17 00:00:00 2001 From: sdgamboa Date: Mon, 1 Apr 2024 20:44:39 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20waldronl?= =?UTF-8?q?ab/bugphyzz@2b30c19b7733ff64817aa32bc29fb21cb8e67bfc=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- articles/attributes.html | 12 ++++++------ index.html | 1 - pkgdown.yml | 2 +- reference/getTaxonSignatures.html | 6 +++--- reference/importBugphyzz.html | 6 +++--- reference/makeSignatures.html | 6 +++--- sitemap.xml | 3 --- 7 files changed, 16 insertions(+), 20 deletions(-) diff --git a/articles/attributes.html b/articles/attributes.html index d4666c73..1d1ea2fe 100644 --- a/articles/attributes.html +++ b/articles/attributes.html @@ -100,22 +100,22 @@

Sources and Attributes

Sources

The 17 sources of annotations in bugphyzz:

-
- +
+

Attributes

Definition of attributes and attribute values. Ontology terms can be searched at OSLv3 and OSLv4.

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- +
+

Sources x Attributes

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- +
+

Session info diff --git a/index.html b/index.html index e6a6a5cc..6e32b1b2 100644 --- a/index.html +++ b/index.html @@ -105,7 +105,6 @@

InstallationbrowseVigenttes("bugphyzz")

TODO:

diff --git a/pkgdown.yml b/pkgdown.yml index 5ff66c7f..47274107 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -4,7 +4,7 @@ pkgdown_sha: ~ articles: attributes: attributes.html bugphyzz: bugphyzz.html -last_built: 2024-04-01T20:23Z +last_built: 2024-04-01T20:40Z urls: reference: https://waldronlab.io/bugphyzz/reference article: https://waldronlab.io/bugphyzz/articles diff --git a/reference/getTaxonSignatures.html b/reference/getTaxonSignatures.html index c8828494..ed536440 100644 --- a/reference/getTaxonSignatures.html +++ b/reference/getTaxonSignatures.html @@ -102,13 +102,13 @@

Examples

bp <- importBugphyzz() #> Importing binary data... #> Downloading, bugphyzz_binary.csv. -#> Using data downloaded on 2024-04-01 20:23:46. +#> Using data downloaded on 2024-04-01 20:40:59. #> Importing multistate data... #> Downloading, bugphyzz_multistate.csv. -#> Using data downloaded on 2024-04-01 20:23:50. +#> Using data downloaded on 2024-04-01 20:41:03. #> Importing numeric data... #> Downloading, bugphyzz_numeric.csv. -#> Using data downloaded on 2024-04-01 20:23:59. +#> Using data downloaded on 2024-04-01 20:41:45. sig_names_1 <- getTaxonSignatures(taxid, bp) sig_names_2 <- getTaxonSignatures(taxonName, bp, tax_id_type = "Taxon_name") diff --git a/reference/importBugphyzz.html b/reference/importBugphyzz.html index 232d8f7c..9880f3e1 100644 --- a/reference/importBugphyzz.html +++ b/reference/importBugphyzz.html @@ -150,11 +150,11 @@

Examples


 bp <- importBugphyzz()
 #> Importing binary data...
-#> Using data downloaded on 2024-04-01 20:23:46.
+#> Using data downloaded on 2024-04-01 20:40:59.
 #> Importing multistate data...
-#> Using data downloaded on 2024-04-01 20:23:50.
+#> Using data downloaded on 2024-04-01 20:41:03.
 #> Importing numeric data...
-#> Using data downloaded on 2024-04-01 20:23:59.
+#> Using data downloaded on 2024-04-01 20:41:45.
 names(bp)
 #>  [1] "animal pathogen"                      
 #>  [2] "antimicrobial sensitivity"            
diff --git a/reference/makeSignatures.html b/reference/makeSignatures.html
index 7c65909a..846f275a 100644
--- a/reference/makeSignatures.html
+++ b/reference/makeSignatures.html
@@ -135,11 +135,11 @@ 
Examples

     

 bp <- importBugphyzz()
 #> Importing binary data...
-#> Using data downloaded on 2024-04-01 20:23:46.
+#> Using data downloaded on 2024-04-01 20:40:59.
 #> Importing multistate data...
-#> Using data downloaded on 2024-04-01 20:23:50.
+#> Using data downloaded on 2024-04-01 20:41:03.
 #> Importing numeric data...
-#> Using data downloaded on 2024-04-01 20:23:59.
+#> Using data downloaded on 2024-04-01 20:41:45.
 sigs <- purrr::map(bp, makeSignatures)
 sigs <- purrr::list_flatten(sigs, name_spec = "{inner}")
 
diff --git a/sitemap.xml b/sitemap.xml
index 13415932..5c65602a 100644
--- a/sitemap.xml
+++ b/sitemap.xml
@@ -9,9 +9,6 @@
   
     https://waldronlab.io/bugphyzz/CONTRIBUTING.html
   
-  
-    https://waldronlab.io/bugphyzz/LICENSE-text.html
-  
   
     https://waldronlab.io/bugphyzz/SUPPORT.html