diff --git a/DESCRIPTION b/DESCRIPTION index 3c4882e..affbbf1 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: bugsigdbr -Version: 1.11.3 +Version: 1.11.4 Title: R-side access to published microbial signatures from BugSigDB Authors@R: c( person(given = "Ludwig", @@ -38,4 +38,4 @@ License: GPL-3 VignetteBuilder: knitr biocViews: DataImport, GeneSetEnrichment, Metagenomics, Microbiome Encoding: UTF-8 -RoxygenNote: 7.3.1 +RoxygenNote: 7.3.2 diff --git a/NEWS.md b/NEWS.md index b5ebf86..b9f4238 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,9 @@ # bugsigdbr +## Changes in version 1.11.4 + +* Update stable release version for data on Zenodo + ## Changes in version 1.8.2 * Uniform first-letter capitalization for Body site and Condition terms diff --git a/R/bugsigdb.R b/R/bugsigdb.R index e16d9ec..dae4a36 100644 --- a/R/bugsigdb.R +++ b/R/bugsigdb.R @@ -42,6 +42,10 @@ #' Latest version (incl. not reviewed content): #' \url{https://github.com/waldronlab/BugSigDBExports} #' +#' Release v1.2.2: \url{https://zenodo.org/records/13997429} +#' +#' Release v1.2.1: \url{https://zenodo.org/records/10627578} +#' #' Release v1.2.0: \url{https://zenodo.org/records/10407666} #' #' Release v1.1.0: \url{https://zenodo.org/records/6468009} @@ -59,7 +63,7 @@ #' df <- importBugSigDB() #' #' @export -importBugSigDB <- function(version = "10.5281/zenodo.10627578", cache = TRUE) +importBugSigDB <- function(version = "10.5281/zenodo.13997429", cache = TRUE) { version <- tolower(version) diff --git a/man/importBugSigDB.Rd b/man/importBugSigDB.Rd index 9eb1911..4d81715 100644 --- a/man/importBugSigDB.Rd +++ b/man/importBugSigDB.Rd @@ -4,7 +4,7 @@ \alias{importBugSigDB} \title{Obtain published microbial signatures from bugsigdb.org} \usage{ -importBugSigDB(version = "10.5281/zenodo.10627578", cache = TRUE) +importBugSigDB(version = "10.5281/zenodo.13997429", cache = TRUE) } \arguments{ \item{version}{character. A Zenodo DOI, git commit hash, or "devel". @@ -62,6 +62,10 @@ Stable release: \url{https://doi.org/10.5281/zenodo.10627578} Latest version (incl. not reviewed content): \url{https://github.com/waldronlab/BugSigDBExports} +Release v1.2.2: \url{https://zenodo.org/records/13997429} + +Release v1.2.1: \url{https://zenodo.org/records/10627578} + Release v1.2.0: \url{https://zenodo.org/records/10407666} Release v1.1.0: \url{https://zenodo.org/records/6468009} diff --git a/tests/testthat/test-importBugSigDB.R b/tests/testthat/test-importBugSigDB.R index cbabc23..d04c9b5 100644 --- a/tests/testthat/test-importBugSigDB.R +++ b/tests/testthat/test-importBugSigDB.R @@ -26,7 +26,7 @@ test_that("importBugSigDB from Zenodo", { test_that("importBugSigDB from the edge (devel)", { bsdb <- bugsigdbr::importBugSigDB(version = "devel", cache = FALSE) url <- "https://tinyurl.com/3nvzm3fx" - checkImport(bsdb, url, nrows = 5500) + checkImport(bsdb, url, nrows = 5450) }) test_that("importBugSigDB from github hash", {