diff --git a/inst/extdata/mpav31.newick b/inst/extdata/mpav31.newick index 893bcca..f6bc395 100644 --- a/inst/extdata/mpav31.newick +++ b/inst/extdata/mpav31.newick @@ -1 +1 @@ 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oflexi|c__Chloroflexia|o__Chloroflexales|f__Oscillochloridaceae|g__Candidatus_Viridilinea|s__Candidatus_Viridilinea_mediisalina:0.0438):0.02314):0.01241,(GCA_001650695|k__Bacteria|p__Chloroflexi|c__Chloroflexia|o__Chloroflexales|f__Chloroflexaceae|g__Chloroflexus|s__Chloroflexus_islandicus:0.01766,(GCA_000021945|k__Bacteria|p__Chloroflexi|c__Chloroflexia|o__Chloroflexales|f__Chloroflexaceae|g__Chloroflexus|s__Chloroflexus_aggregans:0.02749,GCA_000022185|k__Bacteria|p__Chloroflexi|c__Chloroflexia|o__Chloroflexales|f__Chloroflexaceae|g__Chloroflexus|s__Chloroflexus_aurantiacus:0.01632):0.01713):0.03404):0.02725):0.03618):0.04433,((GCA_001306175|k__Bacteria|p__Chloroflexi|c__Ardenticatenia|o__Ardenticatenales|f__Ardenticatenaceae|g__Ardenticatena|s__Ardenticatena_maritima:0.10338,GCA_001796885|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_16_57_9:0.14179):0.02245,((GCA_003130875|k__Bacteria|p__Chloroflexi|c__Ardenticatenia|o__Ardenticatenia_unclassified|f__Ardenticatenia_unclassified|g__Ardenticatenia_unclassified|s__Ardenticatenia_bacterium:0.09735,(GCA_001304175|k__Bacteria|p__Chloroflexi|c__Anaerolineae|o__Anaerolineae_unclassified|f__Anaerolineae_unclassified|g__Anaerolineae_unclassified|s__Anaerolineae_bacterium_SM23_84:0.12724,GCA_001796635|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_13_56_8:0.13906):0.04621):0.02367,(((GCA_001871755|k__Bacteria|p__Chloroflexi|c__Anaerolineae|o__Anaerolineae_unclassified|f__Anaerolineae_unclassified|g__Anaerolineae_unclassified|s__Anaerolineae_bacterium_CG2_30_64_16:0.05403,GCA_002842085|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_HGW_Chloroflexi_1:0.04623):0.0635,(GCA_000281175|k__Bacteria|p__Chloroflexi|c__Caldilineae|o__Caldilineales|f__Caldilineaceae|g__Caldilinea|s__Caldilinea_aerophila:0.09268,GCA_002148365|k__Bacteria|p__Chloroflexi|c__Caldilineae|o__Caldilineales|f__Caldilineaceae|g__Litorilinea|s__Litorilinea_aerophila:0.07166):0.05248):0.0192,(((GCA_001567085|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_OLB15:0.08297,GCA_001567485|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_OLB13:0.09751):0.06704,(GCA_002084625|k__Bacteria|p__Chloroflexi|c__Anaerolineae|o__Anaerolineales|f__Anaerolineaceae|g__Anaerolineaceae_unclassified|s__Anaerolineaceae_bacterium_4572_32_2:0.13156,(GCA_002898735|k__Bacteria|p__Bacteria_unclassified|c__Bacteria_unclassified|o__Bacteria_unclassified|f__Bacteria_unclassified|g__Bacteria_unclassified|s__bacterium_HR22:0.02231,GCA_900187885|k__Bacteria|p__Chloroflexi|c__Thermoflexia|o__Thermoflexales|f__Thermoflexaceae|g__Thermoflexus|s__Thermoflexus_hugenholtzii:0.01807):0.0889):0.01666):0.01165,((GCA_001304495|k__Bacteria|p__Bacteria_unclassified|c__Bacteria_unclassified|o__Bacteria_unclassified|f__Bacteria_unclassified|g__Bacteria_unclassified|s__bacterium_SM23_57:0.16637,GCA_900066015|k__Bacteria|p__Chloroflexi|c__Ardenticatenia|o__Ardenticatenales|f__Ardenticatenaceae|g__Candidatus_Promineofilum|s__Candidatus_Promineofilum_breve:0.12124):0.02411,(GCA_001795155|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_16_56_8:0.16364,((GCA_001795045|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_13_60_9:0.15999,GCA_001796965|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_16_64_43:0.09442):0.03963,(GCA_001796945|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_16_63_12:0.11868,(((GCA_001795115|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_16_48_8:0.08391,GCA_001797105|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_19FT_COMBO_62_14:0.07233):0.01365,(GCA_001795065|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_13_66_10:0.0826,GCA_001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osporangium_aurantiacum:0.03831):0.03448):0.01249,((GCA_000024545|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Glycomycetales|f__Glycomycetaceae|g__Stackebrandtia|s__Stackebrandtia_nassauensis:0.08951,(GCA_900101745|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Glycomycetales|f__Glycomycetaceae|g__Glycomyces|s__Glycomyces_harbinensis:0.02695,(GCA_003002955|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Glycomycetales|f__Glycomycetaceae|g__Glycomyces|s__Glycomyces_artemisiae:0.02542,GCA_900102815|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Glycomycetales|f__Glycomycetaceae|g__Glycomyces|s__Glycomyces_sambucus:0.02775):0.01904):0.05419):0.03251,((GCA_001884705|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Couchioplanes|s__Couchioplanes_caeruleus:0.01924,(GCA_003002065|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Pseudosporangium|s__Pseudosporangium_ferrugineum:0.03044,(GCA_900215205|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Actinoplanes|s__Actinoplanes_atraurantiacus:0.04649,(((GCA_003148685|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Actinoplanes|s__Actinoplanes_xinjiangensis:0.0215,GCA_900113015|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Actinoplanes|s__Actinoplanes_philippinensis:0.01117):0.01249,(GCA_900104725|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Actinoplanes|s__Actinoplanes_derwentensis:0.06165,(GCA_000785985|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Actinoplanes|s__Actinoplanes_utahensis:0.03692,GCA_003001815|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Actinoplanes|s__Actinoplanes_italicus:0.02327):0.00849):0.01):0.01373,((GCA_001509495|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Actinoplanes|s__Actinoplanes_awajinensis:0.02749,GCA_900188005|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Actinoplanes|s__Actinoplanes_regularis:0.02364):0.01523,(GCA_003259845|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Actinoplanes|s__Actinoplanes_lutulentus:0.02691,(GCA_000284295|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Actinoplanes|s__Actinoplanes_missouriensis:0.02862,(GCA_000389965|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Actinoplanes|s__Actinoplanes_sp_N902_109:0.03271,GCA_000494755|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Actinoplanes|s__Actinoplanes_friuliensis:0.04028):0.01846):0.03471):0.01126):0.01031):0.0202):0.01085):0.01388):0.03169,(GCA_003543035|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonosporaceae_unclassified|s__Micromonosporaceae_bacterium:0.08885,((GCA_003387075|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Asanoa|s__Asanoa_ferruginea:0.07035,(GCA_900107455|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Asanoa|s__Asanoa_ishikariensis:0.03461,GCA_900188485|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Asanoa|s__Asanoa_hainanensis:0.01538):0.02063):0.02764,(GCA_900107255|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_pattaloongensis:0.0469,((((GCA_900091565|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_marina:0.01259,GCA_900091605|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_tulbaghiae:0.01535):0.00656,(GCA_003027925|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_sp_RP3T:0.02829,GCA_900090105|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_humi:0.00748):0.00731):0.00621,(((GCA_001279555|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_sp_NRRL_B_16802:0.02313,(GCA_001507315|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Verrucosispora|s__Verrucosispora_maris:0.03467,(GCA_003236315|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Jishengella|s__Jishengella_sp_NA12:0.01212,(GCA_900109115|k__Bacteria|p__Actinobacteria|c__Actino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obacter_chromiiresistens:0.05168):0.00963):0.01035):0.01019):0.04804,(((GCA_001898855|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcales_unclassified|g__Micrococcales_unclassified|s__Micrococcales_bacterium_73_13:0.07266,(GCA_000196075|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcales_unclassified|g__Tropheryma|s__Tropheryma_whipplei:0.1866,((GCA_000699505|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Rhodoluna|s__Rhodoluna_lacicola:0.03192,GCA_001854225|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Rhodoluna|s__Candidatus_Rhodoluna_planktonica:0.02808):0.04163,((GCA_003149555|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Candidatus_Aquiluna|s__Candidatus_Aquiluna_sp_XM_24bin5:0.04017,GCA_900100865|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Candidatus_Aquiluna|s__Candidatus_Aquiluna_sp_UB_MaderosW2red:0.0432):0.0214,(GCA_000257665|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Candidatus_Aquiluna|s__Candidatus_Aquiluna_sp_IMCC13023:0.0241,GCA_003451435|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Candidatus_Aquiluna|s__Candidatus_Aquiluna_sp:0.04193):0.02493):0.02769):0.02917):0.01717):0.00748,((GCA_900163565|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Agrococcus|s__Agrococcus_casei:0.05868,(GCA_900099705|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Agrococcus|s__Agrococcus_jejuensis:0.07063,(GCA_000400485|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Agrococcus|s__Agrococcus_pavilionensis:0.02734,(GCA_900104705|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Agrococcus|s__Agrococcus_carbonis:0.04391,GCA_900114805|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Agrococcus|s__Agrococcus_baldri:0.01844):0.0229):0.02505):0.01762):0.0343,((GCA_003010915|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Gulosibacter|s__Gulosibacter_molinativorax:0.05703,GCA_900163695|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Gulosibacter|s__Gulosibacter_sp_10:0.03828):0.04087,(GCA_002931075|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Pseudoclavibacter|s__Pseudoclavibacter_sp_AY1F1:0.00672,(GCA_002931555|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Pseudoclavibacter|s__Pseudoclavibacter_sp_RFBB5:0.01032,GCA_002931575|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Pseudoclavibacter|s__Pseudoclavibacter_sp_RFBA6:0.01323):0.00461):0.05031):0.02816):0.00939):0.00961,((GCA_003053925|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Microbacteriaceae_unclassified|s__Microbacteriaceae_bacterium_MWH_Ta3:0.07763,(GCA_003325955|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Aurantimicrobium|s__Aurantimicrobium_sp_MWH_Uga1:0.01642,(GCA_002355535|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Aurantimicrobium|s__Aurantimicrobium_minutum:0.00795,GCA_003194085|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Aurantimicrobium|s__Aurantimicrobium_sp_MWH_Mo1:0.02386):0.00983):0.04376):0.02486,((((GCA_001689915|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Microbacterium|s__Microbacterium_sediminis:0.04475,(GCA_001426925|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Microbacterium|s__Microbacterium_sp_Root53:0.03119,GCA_003327285|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Microbacterium|s__Microbacterium_sorbitolivorans:0.07495):0.017):0.01459,((GCA_003387575|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Microbacterium|s__Microbacterium_sp_NEAU_LLE:0.02612,(GCA_001878835|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Microbacterium|s__Microbacterium_sp_AR7_10:0.01245,GCA_002837415|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Actinomycetales_unclassified|g__Actinomycetales_unclassified|s__Actinomycetales_bacterium_SN12:0.03064):0.01691):0.01639,(GCA_001897945|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Microbacterium|s__Microbacterium_sp_69_10:0.04353,((GCA_000956545|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Microbacteriaceae|g__Microbacteri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iaceae|g__Archangium|s__Archangium_gephyra:0.02668):0.02042,(GCA_003044305|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Myxococcales|f__Archangiaceae|g__Vitiosangium|s__Vitiosangium_sp_GDMCC_1_1324:0.03166,(GCA_002305855|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Myxococcales|f__Archangiaceae|g__Melittangium|s__Melittangium_boletus:0.04992,(GCA_001887355|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Myxococcales|f__Archangiaceae|g__Cystobacter|s__Cystobacter_ferrugineus:0.01887,GCA_002305875|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Myxococcales|f__Archangiaceae|g__Cystobacter|s__Cystobacter_fuscus:0.05199):0.0127):0.0129):0.00794):0.01981,(((GCA_000737315|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Myxococcales|f__Archangiaceae|g__Hyalangium|s__Hyalangium_minutum:0.03456,GCA_900111745|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Myxococcales|f__Archangiaceae|g__Stigmatella|s__Stigmatella_erecta:0.02699):0.01569,(GCA_000165485|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Myxococcales|f__Archangiaceae|g__Stigmatella|s__Stigmatella_aurantiaca:0.03858,GCA_000255295|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Myxococcales|f__Myxococcaceae|g__Corallococcus|s__Corallococcus_coralloides:0.05117):0.01953):0.0088,(GCA_900101905|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Myxococcales|f__Myxococcaceae|g__Myxococcus|s__Myxococcus_virescens:0.03056,(GCA_900111765|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Myxococcales|f__Myxococcaceae|g__Myxococcus|s__Myxococcus_fulvus:0.02618,(GCA_000331735|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Myxococcales|f__Myxococcaceae|g__Myxococcus|s__Myxococcus_stipitatus:0.04012,(GCA_000280925|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Myxococcales|f__Myxococcaceae|g__Myxococcus|s__Myxococcus_hansupus:0.04067,(GCA_000012685|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Myxococcales|f__Myxococcaceae|g__Myxococcus|s__Myxococcus_xanthus:0.02238,GCA_002305895|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Myxococcales|f__Myxococcaceae|g__Myxococcus|s__Myxococcus_macrosporus:0.01316):0.02527):0.01247):0.01364):0.01232):0.02108):0.01514):0.05769):0.01783):0.01865):0.0161):0.01135):0.0097,((GCA_002789415|k__Bacteria|p__Nitrospirae|c__Nitrospirae_unclassified|o__Nitrospirae_unclassified|f__Nitrospirae_unclassified|g__Nitrospirae_unclassified|s__Nitrospirae_bacterium_CG_4_9_14_0_8_um_filter_70_14:0.12599,(((GCA_002841765|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Deltaproteobacteria_unclassified|f__Deltaproteobacteria_unclassified|g__Deltaproteobacteria_unclassified|s__Deltaproteobacteria_bacterium_HGW_Deltaproteobacteria_4:0.06907,(GCA_000167355|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Desulfuromonadales|f__Desulfuromonadaceae|g__Desulfuromonas|s__Desulfuromonas_acetoxidans:0.05734,GCA_900101955|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Desulfuromonadales|f__Desulfuromonadaceae|g__Desulfuromonas|s__Desulfuromonas_thiophila:0.05821):0.02262):0.01133,(((GCA_001278055|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Desulfuromonadales|f__Desulfuromonadaceae|g__Desulfuromonas|s__Desulfuromonas_soudanensis:0.06029,GCA_001611275|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Desulfuromonadales|f__Desulfuromonadaceae|g__Desulfuromonas|s__Desulfuromonas_sp_DDH964:0.04942):0.02342,(GCA_001887775|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Desulfuromonadales|f__Desulfuromonadaceae|g__Pelobacter|s__Pelobacter_sp_SFB93:0.07285,(GCA_000012885|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Desulfuromonadales|f__Desulfuromonadaceae|g__Pelobacter|s__Pelobacter_carbinolicus:0.04049,GCA_001887715|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Desulfuromonadales|f__Desulfuromonadaceae|g__Pelobacter|s__Pelobacter_acetylenicus:0.04648):0.02187):0.02611):0.01101,((GCA_002093115|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Desulfuromonadales|f__Geobacteraceae|g__Geothermobacter|s__Geothermobacter_sp_EPR_M:0.01026,GCA_002898515|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Desulfuromonadales|f__Geobacteraceae|g__Geothermobacter|s__Geothermobacter_sp_HR_1:0.01494):0.04993,((GCA_000827125|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Desulfuromonadales|f__Geobacteraceae|g__Geoalkalibacter|s__Geoalkalibacter_subterraneus:0.05632,GCA_900103065|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Desulfuromonadales|f__Geobacteraceae|g__Geoalkalibacter|s__Geoalkalibacter_ferrihydriticus:0.05142):0.02168,(GCA_900107645|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Desulfuromonadales|f__Desulfuromonadaceae|g__Desulfuromusa|s__Desulfuromusa_kysingii:0.05558,GCA_900142125|k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Desulfuromonadales|f__Desulfuromonadaceae|g__Malonomonas|s__Malonomonas_rubra:0.04421):0.03499):0.01215):0.00854):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obacter|s__Caulobacter_sp_774:0.00553,(GCA_002858925|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Caulobacter|s__Caulobacter_zeae:0.00191,GCA_003094615|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Caulobacter|s__Caulobacter_radicis:0.01334):0.0066):0.0118):0.02215):0.00976,(((GCA_000281955|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Caulobacter|s__Caulobacter_sp_AP07:0.00783,GCA_001427665|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Caulobacter|s__Caulobacter_sp_Root655:0.00948):0.01532,(GCA_000019145|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Caulobacter|s__Caulobacter_sp_K31:0.04258,GCA_900114015|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Caulobacter|s__Caulobacter_sp_UNC279MFTsu5_1:0.02045):0.01615):0.0141,(GCA_001414055|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Caulobacter|s__Caulobacter_henricii:0.04288,((GCA_002310455|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Caulobacter|s__Caulobacter_vibrioides:0.01893,(GCA_002742625|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Caulobacter|s__Caulobacter_sp_FWC2:0.04898,GCA_002742645|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Caulobacter|s__Caulobacter_sp_FWC26:0.01839):0.00843):0.01921,(GCA_003015125|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Caulobacter|s__Caulobacter_segnis:0.01504,(GCA_002737755|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Caulobacter|s__Caulobacter_sp_BP25:0.02149,GCA_002742635|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Caulobacter|s__Caulobacter_sp_X:0.01178):0.01211):0.00584):0.01354):0.01024):0.00649):0.02455):0.00963):0.01953):0.03466):0.01732):0.01509,(GCA_900107585|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rubrimonas|s__Rubrimonas_cliftonensis:0.08336,((GCA_900143155|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Oceanicella|s__Oceanicella_actignis:0.04524,(GCA_900106695|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Albimonas|s__Albimonas_donghaensis:0.04463,GCA_900113695|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Albimonas|s__Albimonas_pacifica:0.04231):0.03089):0.01385,(GCA_002803455|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Amaricoccus|s__Amaricoccus_sp_HAR_UPW_R2A_40:0.09208,(((GCA_002162875|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacterales_unclassified|g__Rhodobacterales_unclassified|s__Rhodobacterales_bacterium_52_120_T64:0.08413,(GCA_900231835|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Monaibacterium|s__Monaibacterium_marinum:0.05052,GCA_900302495|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Pontivivens|s__Pontivivens_insulae:0.04783):0.02158):0.01305,(GCA_002860325|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Amylibacter|s__Amylibacter_cionae:0.03531,(GCA_000153745|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacterales_unclassified|g__Rhodobacterales_unclassified|s__Rhodobacterales_bacterium_HTCC2255:0.06982,GCA_002742285|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Amylibacter|s__Amylibacter_kogurei:0.05124):0.02635):0.0257):0.00806,(((GCA_900107025|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Roseicitreum|s__Roseicitreum_antarcticum:0.062,(GCA_001314715|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacteraceae_unclassified|s__Rhodobacteraceae_bacterium_HLUCCA12:0.03196,(GCA_003076755|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Pararhodobacter|s__Pararhodobacter_sp_AM505:0.06441,(GCA_003054005|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Pararhodobacter|s__Pararhodobacter_aggregans:0.03575,GCA_003122215|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Pararhodobacter|s__Pararhodobacter_sp_CIC4N_9:0.02784):0.01625):0.01152):0.01897):0.01093,((GCA_000442315|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteri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oferax_sp_TH121:0.02177):0.01112):0.01901):0.01002):0.01016):0.0099,((GCA_002083775|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Rhodoferax|s__Rhodoferax_ferrireducens:0.02662,(GCA_001955735|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Rhodoferax|s__Rhodoferax_antarcticus:0.04143,GCA_002017865|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Rhodoferax|s__Rhodoferax_fermentans:0.03266):0.01694):0.01337,((GCA_002786915|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Comamonadaceae_unclassified|s__Comamonadaceae_bacterium_CG12_big_fil_rev_8_21_14_0_65_59_15:0.03391,(GCA_002256095|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiales_unclassified|g__Burkholderiales_unclassified|s__Burkholderiales_bacterium_PBB4:0.10622,GCA_002789135|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Comamonadaceae_unclassified|s__Comamonadaceae_bacterium_CG_4_9_14_0_8_um_filter_57_21:0.0325):0.01414):0.00837,(GCA_001872845|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Comamonadaceae_unclassified|s__Comamonadaceae_bacterium_CG2_30_59_20:0.03927,(GCA_001771065|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiales_unclassified|g__Burkholderiales_unclassified|s__Burkholderiales_bacterium_RIFOXYD12_FULL_59_19:0.03652,GCA_002842265|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Betaproteobacteria_unclassified|f__Betaproteobacteria_unclassified|g__Betaproteobacteria_unclassified|s__Betaproteobacteria_bacterium_HGW_Betaproteobacteria_18:0.03627):0.00932):0.00966):0.01217):0.01458):0.00945):0.00348):0.00683,(((GCA_003097105|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Rhodoferax|s__Rhodoferax_sp_YR267:0.01669,GCA_900104385|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Rhodoferax|s__Albidiferax_sp_OV413:0.01675):0.03395,((GCA_001422405|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Pseudorhodoferax|s__Pseudorhodoferax_sp_Leaf267:0.03468,GCA_001422445|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Pseudorhodoferax|s__Pseudorhodoferax_sp_Leaf274:0.01979):0.01137,(GCA_001422365|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Pseudorhodoferax|s__Pseudorhodoferax_sp_Leaf265:0.01516,GCA_003337555|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Pseudorhodoferax|s__Pseudorhodoferax_soli:0.02559):0.00636):0.01636):0.01102,(((GCA_900116715|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Polaromonas|s__Polaromonas_sp_YR568:0.01665,(GCA_000282655|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Polaromonas|s__Polaromonas_sp_CF318:0.01262,GCA_900103405|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Polaromonas|s__Polaromonas_sp_JS666:0.03523):0.01034):0.02616,(GCA_002001015|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Polaromonas|s__Polaromonas_sp_A23:0.0329,(GCA_002002705|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Polaromonas|s__Polaromonas_sp_C04:0.03869,(GCA_002281265|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Polaromonas|s__Polaromonas_sp_35_63_35:0.02892,(GCA_003454315|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Polaromonas|s__Polaromonas_sp:0.04173,GCA_900112285|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Polaromonas|s__Polaromonas_sp_OV174:0.02135):0.01268):0.00404):0.00534):0.0077):0.01561,((GCA_900114785|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Variovorax|s__Variovorax_sp_OV329:0.02542,(GCA_002158865|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Comamonas|s__Comamonas_serinivorans:0.07163,(GCA_003350475|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Pseudacidovorax|s__Pseudacidovorax_intermedius:0.01224,GCA_900156165|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Pseudacidovorax|s__Pseudacidovorax_sp_RU35E:0.01122):0.02202):0.01402):0.00775,(((GCA_002157355|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Variovorax|s__Variovorax_sp_JS1663:0.02053,GCA_003014875|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamona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roteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_dyei:0.00635,((GCA_002939965|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_arboricola:0.02478,GCA_003298965|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_oryzae:0.00705):0.00864,((GCA_000724905|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_axonopodis:0.02906,GCA_002846205|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_prunicola:0.0107):0.00629,(GCA_002939785|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_codiaei:0.00738,GCA_002940015|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_melonis:0.01299):0.00813):0.00314):0.00407):0.00048):0.00491):0.00143):0.00264):0.00707):0.00461):0.0087):0.01283):0.00906):0.00274):0.00717):0.01117):0.01473):0.01013):0.0109):0.01302):0.03107):0.02373):0.00972):0.00649):0.006):0.00428,(((GCA_003337735|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Thioalbus|s__Thioalbus_denitrificans:0.06072,(GCA_002840095|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Gammaproteobacteria_unclassified|f__Gammaproteobacteria_unclassified|g__Gammaproteobacteria_unclassified|s__Gammaproteobacteria_bacterium_HGW_Gammaproteobacteria_1:0.06182,(GCA_002020875|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Gammaproteobacteria_unclassified|f__Gammaproteobacteria_unclassified|g__Gammaproteobacteria_unclassified|s__Solemya_velesiana_gill_symbiont:0.06854,GCA_900102855|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Thiohalomonas|s__Thiohalomonas_denitrificans:0.0615):0.01872):0.00863):0.01137,(((GCA_001447805|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Chromatiaceae|g__Candidatus_Tenderia|s__Candidatus_Tenderia_electrophaga:0.09529,GCA_900112605|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Thiohalospira|s__Thiohalospira_halophila:0.07234):0.02059,((GCA_000754095|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Acidihalobacter|s__Acidihalobacter_prosperus:0.05612,GCA_001975725|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Acidihalobacter|s__Acidihalobacter_ferrooxidans:0.07502):0.03091,((GCA_000021985|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Thioalkalivibrio|s__Thioalkalivibrio_sulfidiphilus:0.06422,GCA_002000365|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Thioalkalivibrio|s__Thioalkalivibrio_denitrificans:0.03878):0.01394,(GCA_000227725|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Thiorhodospira|s__Thiorhodospira_sibirica:0.06968,((GCA_000225005|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Ectothiorhodospira|s__Ectothiorhodospira_sp_PHS_1:0.02056,GCA_900110965|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Ectothiorhodospira|s__Ectothiorhodospira_magna:0.01909):0.02362,(GCA_900114895|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Ectothiorhodospira|s__Ectothiorhodospira_mobilis:0.04566,(GCA_900156225|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Ectothiorhodosinus|s__Ectothiorhodosinus_mongolicus:0.07093,(GCA_900109495|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Ectothiorhodospira|s__Ectothiorhodospira_marina:0.02572,(GCA_000583815|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Halorhodospira|s__Halorhodospira_halochloris:0.0194,GCA_001632845|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Ectothiorhodospira|s__Ectothiorhodospira_sp_BSL_9:0.01829):0.03672):0.01421):0.01349):0.00808):0.01283):0.01044):0.01571):0.01177):0.00522,((((GCA_001801995|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Gammaproteobacteria_unclassified|f__Gammaproteobacteria_unclassified|g__Gammaproteobacteria_unclassified|s__Gammaproteobacteria_bacterium_RIFOXYD12_FULL_61_37:0.07417,GCA_002869585|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Gammaproteobacteria_unclassified|f__Gammaproteobacteria_unclassified|g__Sedimenticola|s__Sedimenticola_sp:0.0528):0.012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roteobacteria|o__Enterobacterales|f__Pectobacteriaceae|g__Brenneria|s__Brenneria_roseae:0.03357,(GCA_003315515|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Pectobacteriaceae|g__Brenneria|s__Brenneria_salicis:0.03535,(GCA_003028395|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Pectobacteriaceae|g__Pectobacterium|s__Pectobacterium_punjabense:0.0077,(GCA_002847345|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Pectobacteriaceae|g__Pectobacterium|s__Pectobacterium_peruviense:0.01101,(GCA_003382645|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Pectobacteriaceae|g__Pectobacterium|s__Pectobacterium_aquaticum:0.00841,(GCA_003595125|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Pectobacteriaceae|g__Pectobacterium|s__Pectobacterium_carotovorum:0.00459,((GCA_000749865|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Pectobacteriaceae|g__Pectobacterium|s__Pectobacterium_wasabiae:0.00682,GCA_003121785|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Pectobacteriaceae|g__Pectobacterium|s__Pectobacterium_parmentieri:0.01526):0.01182,(GCA_000749845|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Pectobacteriaceae|g__Pectobacterium|s__Pectobacterium_betavasculorum:0.01481,GCA_002288545|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Pectobacteriaceae|g__Pectobacterium|s__Pectobacterium_polaris:0.03832):0.00505):0.00597):0.00796):0.00928):0.00517):0.01258):0.0105):0.01381):0.01533,((GCA_003206015|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Serratia|s__Serratia_plymuthica:0.03065,((GCA_002592035|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Serratia|s__Serratia_marcescens:0.02823,(GCA_000738675|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Serratia|s__Serratia_nematodiphila:0.02903,GCA_000988045|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Serratia|s__Serratia_ureilytica:0.0572):0.02706):0.00677,(GCA_001908045|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Serratia|s__Serratia_fonticola:0.03542,((GCA_003075015|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Serratia|s__Serratia_liquefaciens:0.0268,GCA_900456965|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Serratia|s__Serratia_quinivorans:0.02129):0.00765,((GCA_000821185|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Serratia|s__Serratia_symbiotica:0.06243,GCA_003576035|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Serratia|s__Serratia_odorifera:0.01729):0.01182,(GCA_001976145|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Serratia|s__Serratia_oryzae:0.0161,GCA_002291425|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Gibbsiella|s__Gibbsiella_quercinecans:0.052):0.01452):0.00336):0.00603):0.00535):0.00448):0.01769,(((GCA_000735345|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Ewingella|s__Ewingella_americana:0.04462,(GCA_002093665|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Rouxiella|s__Rouxiella_badensis:0.03164,(GCA_000257645|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Serratia|s__Serratia_sp_M24T3:0.02428,(GCA_001422565|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Serratia|s__Serratia_sp_Leaf50:0.02474,GCA_002093625|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Rouxiella|s__Rouxiella_silvae:0.00968):0.01763):0.00815):0.01832):0.00486,(GCA_001422575|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Serratia|s__Serratia_sp_Leaf51:0.02858,(GCA_002834385|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Rahnella|s__Rahnella_sp_AA:0.01693,(GCA_002951615|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Rahnella|s__Rahnella_sp_ERMR1_05:0.0433,(GCA_000241955|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Rahnella|s__Rahnella_aquatilis:0.03175,GCA_002303785|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Rahnella|s__Rahnella_victoriana:0.02363):0.01597):0.01796):0.01194):0.01868):0.01547,((GCA_002858825|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersinia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lassified|s__Chloroflexi_bacterium_RBG_13_60_13:0.0591):0.06095):0.03519):0.01031,((GCA_001796515|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_13_51_36:0.09719,(GCA_001796725|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_16_48_7:0.17698,(GCA_001795015|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_13_50_10:0.07687,GCA_001796445|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_13_48_17:0.06691):0.02128):0.01657):0.0398,(GCA_001303565|k__Bacteria|p__Chloroflexi|c__Dehalococcoidia|o__Dehalococcoidia_unclassified|f__Dehalococcoidia_unclassified|g__Dehalococcoidia_unclassified|s__Dehalococcoidia_bacterium_SG8_51_3:0.12927,((GCA_002007845|k__Bacteria|p__Chloroflexi|c__Dehalococcoidia|o__Dehalococcoidales|f__Dehalococcoidaceae|g__Dehalococcoides|s__Dehalococcoides_mccartyi:0.12814,(GCA_000143165|k__Bacteria|p__Chloroflexi|c__Dehalococcoidia|o__Dehalococcoidia_unclassified|f__Dehalococcoidia_unclassified|g__Dehalogenimonas|s__Dehalogenimonas_lykanthroporepellens:0.06488,(GCA_001005265|k__Bacteria|p__Chloroflexi|c__Dehalococcoidia|o__Dehalococcoidia_unclassified|f__Dehalococcoidia_unclassified|g__Dehalogenimonas|s__Dehalogenimonas_sp_WBC_2:0.06032,(GCA_003095415|k__Bacteria|p__Chloroflexi|c__Dehalococcoidia|o__Dehalococcoidia_unclassified|f__Dehalococcoidia_unclassified|g__Dehalogenimonas|s__Dehalogenimonas_alkenigignens:0.03423,(GCA_001953175|k__Bacteria|p__Chloroflexi|c__Dehalococcoidia|o__Dehalococcoidia_unclassified|f__Dehalococcoidia_unclassified|g__Dehalogenimonas|s__Dehalogenimonas_formicexedens:0.04005,GCA_002878295|k__Bacteria|p__Chloroflexi|c__Dehalococcoidia|o__Dehalococcoidia_unclassified|f__Dehalococcoidia_unclassified|g__Dehalogenimonas|s__Dehalogenimonas_sp_GP:0.02042):0.02449):0.01415):0.01332)670486:0.04832):0.04979,((GCA_001794985|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_13_46_9:0.14958,(GCA_001796415|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_13_46_14:0.12275,(GCA_001795195|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_16_57_8:0.11642,GCA_001796805|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_16_51_9:0.09059):0.02237):0.02065):0.01613,(GCA_001796765|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_16_50_9:0.07758,(GCA_001796935|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_16_60_22:0.07143,(GCA_001796865|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_16_56_11:0.05872,(GCA_001796675|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_13_57_8:0.08216,((GCA_001796555|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_13_52_12:0.06414,GCA_001796755|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_16_50_11:0.03123):0.01557,(GCA_001795205|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_16_58_8:0.07528,(GCA_001796495|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_13_51_18:0.03752,GCA_001796525|k__Bacteria|p__Chloroflexi|c__Chloroflexi_unclassified|o__Chloroflexi_unclassified|f__Chloroflexi_unclassified|g__Chloroflexi_unclassified|s__Chloroflexi_bacterium_RBG_13_51_52:0.04892):0.01352):0.02109):0.01256):0.01202):0.01307):0.0156):0.03635):0.01108):0.01502):0.01933):0.01325):0.01465):0.03699):0.01243)301297+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ora_sp_CB01531:0.02362,GCA_900090245|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_halophytica:0.01657):0.00505):0.0009,((GCA_002210435|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_wenchangensis:0.02459,GCA_003205615|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_arborensis:0.02356):0.00582,((GCA_002926165|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_chalcea:0.00731,GCA_003419935|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Jishengella|s__Jishengella_endophytica:0.00553):0.01053,(GCA_003172935|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_sp_4G51:0.01606,(GCA_001567585|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_rosaria:0.03422,(GCA_003013775|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_sp_MH33:0.0187,GCA_003176735|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_globispora:0.01697):0.00241):0.00899):0.00152):0.00453):0.0047):0.00629):0.00447):0.00111):0.00465,((((GCA_900091455|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_coriariae:0.01697,GCA_900143515|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_cremea:0.01843):0.01418,(GCA_900091425|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_krabiensis:0.03562,(GCA_900090315|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_citrea:0.02241,GCA_900091585|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_nigra:0.02844):0.00521):0.00918):0.00201,((GCA_900090325|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_pallida:0.03136,(GCA_900091415|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_inyonensis:0.03733,GCA_900091495|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_echinospora:0.02579):0.00995):0.01711,((GCA_900089585|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_sediminicola:0.03527,GCA_900091505|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_chokoriensis:0.04513):0.00337,(GCA_002754655|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Verrucosispora|s__Verrucosispora_sp_CNZ293:0.02655,(GCA_900091625|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_peucetia:0.04571,(GCA_900090285|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_inositola:0.03352,(GCA_000158815|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_sp_ATCC_39149:0.04531,GCA_900091475|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_chersina:0.02359):0.00495):0.01478):0.00656):0.00684):0.00623):0.00575):0.00952,((GCA_900091445|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_echinofusca:0.0328,(GCA_900091515|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_purpureochromogenes:0.02747,GCA_900091545|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_viridifaciens:0.03562):0.01957):0.01316,(GCA_900090235|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_echinaurantiaca:0.0208,((GCA_900089595|k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micromonosporales|f__Micromonosporaceae|g__Micromonospora|s__Micromonospora_auratinigra:0.01796,(GCA_002846275|k__Bacteria|p__Actinobacteria|c__Actinobacteria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chaetaceae|g__Spirochaeta|s__Spirochaeta_thermophila:0.12143,GCA_001829505|k__Bacteria|p__Spirochaetes|c__Spirochaetes_unclassified|o__Spirochaetes_unclassified|f__Spirochaetes_unclassified|g__Spirochaetes_unclassified|s__Spirochaetes_bacterium_RBG_16_67_19:0.13428):0.03581,((GCA_000143985|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Sediminispirochaeta|s__Sediminispirochaeta_smaragdinae:0.10781,(GCA_000208385|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Sphaerochaeta|s__Sphaerochaeta_coccoides:0.09655,(GCA_000236685|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Sphaerochaeta|s__Sphaerochaeta_pleomorpha:0.06367,(GCA_000190435|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Sphaerochaeta|s__Sphaerochaeta_globosa:0.05798,GCA_003429665|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Sphaerochaeta|s__Sphaerochaeta_halotolerans:0.03652):0.02869)399320:0.03505)2791015:0.07215):0.03346,(((GCA_000768055|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Alkalispirochaeta|s__Alkalispirochaeta_odontotermitis:0.17324,GCA_002084135|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Spirochaeta|s__Spirochaeta_sp_LUC14_002_19_P3:0.09506):0.05075,(GCA_002084785|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Spirochaetaceae_unclassified|s__Spirochaetaceae_bacterium_4572_7:0.15612,(GCA_002084805|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Spirochaetaceae_unclassified|s__Spirochaetaceae_bacterium_4572_59:0.05271,GCA_003346715|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Oceanispirochaeta|s__Oceanispirochaeta_sp_M1:0.05795):0.04247):0.0161):0.02461,((GCA_002087085|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Marispirochaeta|s__Marispirochaeta_aestuarii:0.0922,GCA_003454605|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Spirochaeta|s__Spirochaeta_sp:0.13891):0.02082,((GCA_002916695|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Alkalispirochaeta|s__Alkalispirochaeta_sphaeroplastigenens:0.02188,GCA_900156105|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Alkalispirochaeta|s__Alkalispirochaeta_americana:0.02147):0.11278,(GCA_000242595|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Spirochaeta|s__Spirochaeta_africana:0.12186,(GCA_000507245|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Salinispira|s__Salinispira_pacifica:0.09415,GCA_000758165|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Spirochaeta|s__Spirochaeta_lutea:0.08028):0.02794):0.01614):0.02392):0.01972)2024958:0.01586):0.01414)137+146:0.02089,(((GCA_001829245|k__Bacteria|p__Spirochaetes|c__Spirochaetes_unclassified|o__Spirochaetes_unclassified|f__Spirochaetes_unclassified|g__Spirochaetes_unclassified|s__Spirochaetes_bacterium_GWC1_61_12:0.07561,(GCA_002839245|k__Bacteria|p__Spirochaetes|c__Spirochaetes_unclassified|o__Spirochaetes_unclassified|f__Spirochaetes_unclassified|g__Spirochaetes_unclassified|s__Spirochaetae_bacterium_HGW_Spirochaetae_7:0.04814,GCA_002839315|k__Bacteria|p__Spirochaetes|c__Spirochaetes_unclassified|o__Spirochaetes_unclassified|f__Spirochaetes_unclassified|g__Spirochaetes_unclassified|s__Spirochaetae_bacterium_HGW_Spirochaetae_3:0.03214):0.04344):0.06909,(GCA_000219725|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_caldarium:0.06103,(GCA_001831045|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_sp_GWC1_61_84:0.0755,(GCA_000214355|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_azotonutricium:0.05491,GCA_000214375|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_primitia:0.05209):0.03155):0.01505)2951104:0.03054):0.01877,(((GCA_000217655|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_paraluiscuniculi:0.00633,GCA_001713175|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_pallidum:0.01153):0.13898,((GCA_000447675|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_pedis:0.04865,(GCA_000340605|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_denticola:0.01638,GCA_000755145|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_putidum:0.03284):0.02294):0.06301,(GCA_000187105|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_phagedenis:0.06094,(GCA_000175895|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_vincentii:0.01821,(GCA_000413035|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_medium:0.00557,GCA_000775995|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_sp_OMZ_838:0.02459):0.02441):0.05258):0.01947):0.02258):0.03402,((GCA_001885315|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_sp_CETP13:0.09371,(GCA_000413055|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_maltophilum:0.058,GCA_000468055|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_lecithinolyticum:0.04351):0.02886):0.02011,(GCA_000212415|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_brennaborense:0.05651,(GCA_000413015|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_socranskii:0.07203,(GCA_000195275|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_succinifaciens:0.09353,((GCA_000255555|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_saccharophilum:0.05584,GCA_900167025|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_berlinense:0.07274):0.02056,(GCA_900167145|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_porcinum:0.05012,(GCA_000260795|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_sp_JC4:0.03033,GCA_900113965|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Spirochaetales|f__Spirochaetaceae|g__Treponema|s__Treponema_bryantii:0.03835):0.02832):0.02472):0.01714):0.01081):0.02935):0.02051):0.03466):0.04794)2845253+157:0.03559):0.02635)136:0.02398):0.03085):0.01799):0.01041):0.01657,((GCA_002176985|k__Bacteria|p__Bacteria_unclassified|c__Bacteria_unclassified|o__Bacteria_unclassified|f__Bacteria_unclassified|g__Bacteria_unclassified|s__bacterium_K02_2017:0.19736,((GCA_001794905|k__Bacteria|p__Chlamydiae|c__Chlamydiae_unclassified|o__Chlamydiae_unclassified|f__Chlamydiae_unclassified|g__Chlamydiae_unclassified|s__Chlamydiae_bacterium_RIFCSPHIGHO2_12_FULL_49_11:0.17573,((GCA_003339615|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Parachlamydiales|f__Candidatus_Parilichlamydiaceae|g__Candidatus_Similichlamydia|s__Candidatus_Similichlamydia_laticola:0.19461,GCA_900093645|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Chlamydiales|f__Chlamydiales_unclassified|g__Chlamydiales_unclassified|s__Chlamydiales_bacterium_SCGC_AB_751_O23:0.1482):0.05359,(((GCA_001653975|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Chlamydiales|f__Chlamydiaceae|g__Chlamydia|s__Chlamydia_sp_2742_308:0.0575,(GCA_000470805|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Chlamydiales|f__Chlamydiaceae|g__Chlamydia|s__Chlamydia_pecorum:0.04579,(GCA_001007065|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Chlamydiales|f__Chlamydiaceae|g__Chlamydia|s__Chlamydia_pneumoniae:0.01691,GCA_900239945|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Chlamydiales|f__Chlamydiaceae|g__Chlamydia|s__Chlamydia_sp_H15_1957_10C:0.02931):0.0267):0.01582):0.0129,(GCA_000454725|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Chlamydiales|f__Chlamydiaceae|g__Chlamydia|s__Chlamydia_ibidis:0.04349,((GCA_900149595|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Chlamydiales|f__Chlamydiaceae|g__Chlamydia|s__Chlamydia_suis:0.0209,(GCA_000700905|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Chlamydiales|f__Chlamydiaceae|g__Chlamydia|s__Chlamydia_muridarum:0.01802,GCA_002192615|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Chlamydiales|f__Chlamydiaceae|g__Chlamydia|s__Chlamydia_trachomatis:0.0114):0.01276):0.05288,((GCA_000471025|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Chlamydiales|f__Chlamydiaceae|g__Chlamydia|s__Chlamydia_gallinacea:0.01871,GCA_000583875|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Chlamydiales|f__Chlamydiaceae|g__Chlamydia|s__Chlamydia_avium:0.02804):0.03849,((GCA_000298515|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Chlamydiales|f__Chlamydiaceae|g__Chlamydia|s__Chlamydia_psittaci:0.01469,GCA_900118995|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Chlamydiales|f__Chlamydiaceae|g__Chlamydia|s__Chlamydia_abortus:0.0186):0.01002,(GCA_000007605|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Chlamydiales|f__Chlamydiaceae|g__Chlamydia|s__Chlamydia_caviae:0.01652,GCA_000009945|k__Bacteria|p__Chlamydiae|c__Chlamydiia|o__Chlamydiales|f__Chlamydiaceae|g__Chl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omonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_hankookensis:0.0152):0.03322):0.01188):0.0111,((GCA_002841225|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Alphaproteobacteria_unclassified|f__Alphaproteobacteria_unclassified|g__Alphaproteobacteria_unclassified|s__Alphaproteobacteria_bacterium_HGW_Alphaproteobacteria_16:0.04932,(GCA_001721295|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_turrisvirgatae:0.02476,GCA_002797435|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_koreensis:0.06199):0.00923):0.01868,(((GCA_001469845|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_WG:0.01663,GCA_900114095|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_NFR04:0.02077):0.00524,(GCA_001650735|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_TDK1:0.00682,GCA_003096275|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_L3B27:0.04138):0.00544):0.02792,((GCA_003096895|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_CF311:0.03157,(GCA_001899725|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_67_41:0.01225,GCA_002127225|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_IBVSS2:0.01331):0.00971):0.01266,(GCA_001428865|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_Root241:0.01593,(GCA_002002925|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_LM7:0.02937,(GCA_000935025|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_hengshuiensis:0.06259,GCA_002796605|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_Cra20:0.01447):0.00688):0.01189):0.01875):0.00697):0.00916):0.00765):0.00826,((GCA_003345355|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_WZY_27:0.04818,GCA_003550065|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Hephaestia|s__Hephaestia_caeni:0.04824):0.0146,(((GCA_002083435|k__Bacteria|p__Proteobacteria|c__Proteobacteria_unclassified|o__Proteobacteria_unclassified|f__Proteobacteria_unclassified|g__Proteobacteria_unclassified|s__Proteobacteria_bacterium_SG_bin6:0.02756,GCA_002083475|k__Bacteria|p__Proteobacteria|c__Proteobacteria_unclassified|o__Proteobacteria_unclassified|f__Proteobacteria_unclassified|g__Proteobacteria_unclassified|s__Proteobacteria_bacterium_SG_bin5:0.04876):0.03444,((GCA_002083645|k__Bacteria|p__Proteobacteria|c__Proteobacteria_unclassified|o__Proteobacteria_unclassified|f__Proteobacteria_unclassified|g__Proteobacteria_unclassified|s__Proteobacteria_bacterium_ST_bin13:0.0123,GCA_002281505|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_28_62_20:0.00709):0.0275,(GCA_002083655|k__Bacteria|p__Proteobacteria|c__Proteobacteria_unclassified|o__Proteobacteria_unclassified|f__Proteobacteria_unclassified|g__Proteobacteria_unclassified|s__Proteobacteria_bacterium_ST_bin14:0.02628,GCA_002280555|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_32_62_10:0.02556):0.01201):0.01615):0.0094,((GCA_003061185|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_HMWF008:0.03949,(GCA_001423845|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_Leaf357:0.03945,(GCA_001717955|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_panacis:0.05141,GCA_900103265|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_NFR15:0.02433):0.01629):0.00999):0.01266,((GCA_001421505|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas|s__Sphingomonas_sp_Leaf17:0.03886,((GCA_001421535|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingom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roteobacteria|o__Betaproteobacteria_unclassified|f__Betaproteobacteria_unclassified|g__Candidatus_Accumulibacter|s__Candidatus_Accumulibacter_sp_SK_02:0.02557,(GCA_000584955|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Betaproteobacteria_unclassified|f__Betaproteobacteria_unclassified|g__Candidatus_Accumulibacter|s__Candidatus_Accumulibacter_sp_SK_01:0.02173,GCA_000585035|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Betaproteobacteria_unclassified|f__Betaproteobacteria_unclassified|g__Candidatus_Accumulibacter|s__Candidatus_Accumulibacter_sp_BA_91:0.04713):0.01402):0.01571):0.01008):0.00867,((GCA_000585055|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Betaproteobacteria_unclassified|f__Betaproteobacteria_unclassified|g__Candidatus_Accumulibacter|s__Candidatus_Accumulibacter_sp_BA_92:0.02787,GCA_000585075|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Betaproteobacteria_unclassified|f__Betaproteobacteria_unclassified|g__Candidatus_Accumulibacter|s__Candidatus_Accumulibacter_sp_BA_93:0.03763):0.02172,(GCA_000585015|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Betaproteobacteria_unclassified|f__Betaproteobacteria_unclassified|g__Candidatus_Accumulibacter|s__Candidatus_Accumulibacter_sp_SK_12:0.02403,(GCA_000585095|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Betaproteobacteria_unclassified|f__Betaproteobacteria_unclassified|g__Candidatus_Accumulibacter|s__Candidatus_Accumulibacter_sp_BA_94:0.03513,(GCA_000584995|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Betaproteobacteria_unclassified|f__Betaproteobacteria_unclassified|g__Candidatus_Accumulibacter|s__Candidatus_Accumulibacter_sp_SK_11:0.01023,GCA_003487685|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Betaproteobacteria_unclassified|f__Betaproteobacteria_unclassified|g__Candidatus_Accumulibacter|s__Candidatus_Accumulibacter_sp:0.03971):0.02634):0.00945):0.02185):0.00851)522306:0.02439)327159:0.01019):0.0145):0.00819,((GCA_900174485|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Nitrosomonadales|f__Sterolibacteriaceae|g__Sterolibacterium|s__Sterolibacterium_denitrificans:0.06847,((GCA_002840845|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Betaproteobacteria_unclassified|f__Betaproteobacteria_unclassified|g__Betaproteobacteria_unclassified|s__Betaproteobacteria_bacterium_HGW_Betaproteobacteria_14:0.03905,GCA_003105015|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Rhodocyclales|f__Rhodocyclales_unclassified|g__Rhodocyclales_unclassified|s__Rhodocyclales_bacterium:0.03824):0.02949,((GCA_000934545|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Rhodocyclales|f__Rhodocyclaceae|g__Rugosibacter|s__Rugosibacter_aromaticivorans:0.05711,GCA_002842395|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Betaproteobacteria_unclassified|f__Betaproteobacteria_unclassified|g__Betaproteobacteria_unclassified|s__Betaproteobacteria_bacterium_HGW_Betaproteobacteria_11:0.04341):0.02617,(GCA_001828915|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Rhodocyclales|f__Rhodocyclales_unclassified|g__Rhodocyclales_unclassified|s__Rhodocyclales_bacterium_GWA2_65_19:0.03956,(GCA_000828635|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Nitrosomonadales|f__Sterolibacteriaceae|g__Sulfuritalea|s__Sulfuritalea_hydrogenivorans:0.04271,GCA_001828935|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Rhodocyclales|f__Rhodocyclales_unclassified|g__Rhodocyclales_unclassified|s__Rhodocyclales_bacterium_RIFCSPLOWO2_02_FULL_63_24:0.02209):0.0151):0.02444):0.01201):0.00717):0.01463,((GCA_002284945|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Rhodocyclales|f__Rhodocyclaceae|g__Candidatus_Dactylopiibacterium|s__Candidatus_Dactylopiibacterium_carminicum:0.05631,GCA_002855595|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Rhodocyclales|f__Zoogloeaceae|g__Uliginosibacterium|s__Uliginosibacterium_sp_TH139:0.03222):0.03532,(((GCA_002872475|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Rhodocyclales|f__Zoogloeaceae|g__Azoarcus|s__Azoarcus_sp_SY39:0.06112,(GCA_003054515|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Rhodocyclales|f__Zoogloeaceae|g__Zoogloeaceae_unclassified|s__Zoogloeaceae_bacteirum_Par_f_2:0.03965,(GCA_000349945|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Rhodocyclales|f__Zoogloeaceae|g__Azoarcus|s__Azoarcus_sp_KH32C:0.03495,GCA_001190925|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Rhodocyclales|f__Zoogloeaceae|g__Azoarcus|s__Azoarcus_sp_CIB:0.02671):0.02471):0.00686):0.00735,(GCA_000025965|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Rhodocyclales|f__Rhodocyclaceae|g__Aromatoleum|s__Aromatoleum_aromaticum:0.05796,(GCA_001682385|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Rhodocyclales|f__Zoogloeaceae|g__Azoarcus|s__Azoarcus_olearius:0.03824,(GCA_002354895|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Rhodocyclales|f__Zoogloeaceae|g__Thauera|s__Thauera_sp_K11:0.03126,(GCA_00192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aproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_citri:0.03608,GCA_002285515|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_hortorum:0.01428):0.02021):0.00437)56454:0.00762):0.00151):0.01006,(GCA_000764855|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_cannabis:0.00848,((GCA_002940045|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_pisi:0.00818,(GCA_003409975|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_nasturtii:0.00476,(GCA_000192045|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_perforans:0.02278,(GCA_000007245|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xylella|s__Xylella_fastidiosa:0.06365,GCA_900183985|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_fragariae:0.02754):0.01267):0.0218):0.00801):0.00644,(GCA_002939865|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_dyei:0.00635,((GCA_002939965|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_arboricola:0.02478,GCA_003298965|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_oryzae:0.00705):0.00864,((GCA_000724905|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_axonopodis:0.02906,GCA_002846205|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_prunicola:0.0107):0.00629,(GCA_002939785|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_codiaei:0.00738,GCA_002940015|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Xanthomonas|s__Xanthomonas_melonis:0.01299):0.00813):0.00314):0.00407):0.00048):0.00491):0.00143):0.00264):0.00707):0.00461):0.0087):0.01283):0.00906):0.00274)2370+40323:0.00717)83618:0.01117)338:0.01473)32033:0.01013):0.0109):0.01302)135614+1775411:0.03107):0.02373):0.00972):0.00649):0.006)1775403:0.00428,(((GCA_003337735|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Thioalbus|s__Thioalbus_denitrificans:0.06072,(GCA_002840095|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Gammaproteobacteria_unclassified|f__Gammaproteobacteria_unclassified|g__Gammaproteobacteria_unclassified|s__Gammaproteobacteria_bacterium_HGW_Gammaproteobacteria_1:0.06182,(GCA_002020875|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Gammaproteobacteria_unclassified|f__Gammaproteobacteria_unclassified|g__Gammaproteobacteria_unclassified|s__Solemya_velesiana_gill_symbiont:0.06854,GCA_900102855|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Thiohalomonas|s__Thiohalomonas_denitrificans:0.0615):0.01872):0.00863):0.01137,(((GCA_001447805|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Chromatiaceae|g__Candidatus_Tenderia|s__Candidatus_Tenderia_electrophaga:0.09529,GCA_900112605|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Thiohalospira|s__Thiohalospira_halophila:0.07234):0.02059,((GCA_000754095|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Acidihalobacter|s__Acidihalobacter_prosperus:0.05612,GCA_001975725|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Acidihalobacter|s__Acidihalobacter_ferrooxidans:0.07502)1765964:0.03091,((GCA_000021985|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Thioalkalivibrio|s__Thioalkalivibrio_sulfidiphilus:0.06422,GCA_002000365|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Thioalkalivibrio|s__Thioalkalivibrio_denitrificans:0.03878):0.01394,(GCA_000227725|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Thiorhodospira|s__Thiorhodospira_sibirica:0.06968,((GCA_000225005|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Ectothiorhodospira|s__Ectothiorhodospira_sp_PHS_1:0.02056,GCA_900110965|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Chromatiales|f__Ectothiorhodospiraceae|g__Ectothiorhodospira|s__Ectothiorhodospira_magna:0.01909):0.02362,(GCA_900114895|k__Bact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roteobacteria|o__Gammaproteobacteria_unclassified|f__Gammaproteobacteria_unclassified|g__Pseudohongiella|s__Pseudohongiella_acticola:0.05356):0.01176)1524249:0.02302):0.04436,((GCA_002839965|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Gammaproteobacteria_unclassified|f__Gammaproteobacteria_unclassified|g__Gammaproteobacteria_unclassified|s__Gammaproteobacteria_bacterium_HGW_Gammaproteobacteria_6:0.09151,GCA_003061305|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_sp_HMWF031:0.08006):0.02718,(GCA_003097315|k__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacteriaceae_unclassified|s__Flavobacteriaceae_bacterium_Hp12:0.14197,((GCA_003051055|k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Carnobacteriaceae|g__Agitococcus|s__Agitococcus_lubricus:0.07973,(GCA_002943415|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Perlucidibaca|s__Perlucidibaca_sp_HR_E:0.03382,GCA_003387535|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Paraperlucidibaca|s__Paraperlucidibaca_baekdonensis:0.0472):0.03015):0.01357,((((GCA_001188545|k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodospirillales|f__Rhodospirillales_unclassified|g__Enhydrobacter|s__Enhydrobacter_aerosaccus:0.02486,GCA_002752755|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_osloensis:0.03232):0.02554,(GCA_000320365|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_macacae:0.06304,GCA_002027585|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_atlantae:0.03933):0.01392):0.01431,(((GCA_000988685|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_bovoculi:0.00376,GCA_001636015|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_ovis:0.0082):0.04719,((GCA_002224245|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_sp_VT_16_12:0.03013,((GCA_001679155|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_nonliquefaciens:0.02367,GCA_900453285|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_caprae:0.02622):0.0069,(GCA_002027545|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_lacunata:0.02436,(GCA_002014975|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_bovis:0.01591,GCA_002027555|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_equi:0.00569):0.00541):0.00154):0.01921):0.01505,(GCA_002014985|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_caviae:0.02714,(GCA_900156515|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_cuniculi:0.04115,((GCA_002014825|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_pluranimalium:0.02597,GCA_002014855|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_porci:0.02113):0.01239,(GCA_000193085|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_catarrhalis:0.02663,GCA_002014965|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_canis:0.03162):0.00753):0.00687):0.012):0.0068):0.00561):0.03174,(GCA_002014765|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella|s__Moraxella_lincolnii:0.04384,(((GCA_900162815|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Psychrobacter|s__Psychrobacter_pasteurii:0.00642,GCA_900162825|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Psychrobacter|s__Psychrobacter_piechaudii:0.00903):0.01276,(GCA_000213615|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Psychrobacter|s__Psychrobacter_sp_1501_2011:0.01668,(GCA_002313155|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Psychrobacter|s__Psychrobacter_sp_FDAARGOS_221:0.03396,GCA_900455955|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Psychrobacter|s__Psychrobacter_phenylpyruvicus:0.01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roteobacteria|o__Vibrionales|f__Vibrionaceae|g__Grimontia|s__Grimontia_marina:0.03002,(GCA_000333895|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Grimontia|s__Grimontia_indica:0.00861,GCA_001558255|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Grimontia|s__Grimontia_hollisae:0.07326):0.0076):0.00519)246861:0.02373):0.0086):0.01815,(((GCA_900454675|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_damselae:0.03985,((GCA_000153265|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_angustum:0.01432,GCA_000153325|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_sp_SKA34:0.02912):0.01601,(GCA_003026715|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_leiognathi:0.02452,(GCA_003025755|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_phosphoreum:0.01705,(GCA_003025455|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_iliopiscarium:0.00837,(GCA_003026515|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_aquimaris:0.02347,(GCA_900166975|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_toruni:0.02068,(GCA_003026355|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_kishitanii:0.02967,(GCA_002849605|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_carnosum:0.01831,GCA_900166965|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_piscicola:0.01206):0.00591):0.00773):0.00494):0.01032):0.00843):0.02743):0.01956):0.01963):0.01343,((GCA_001029445|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_aquae:0.04804,((GCA_001029435|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_aphoticum:0.02469,GCA_003025595|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_ganghwense:0.03845):0.01083,(GCA_003026495|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_sanctipauli:0.02328,(GCA_003025555|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_lutimaris:0.03763,GCA_003026455|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_rosenbergii:0.02005):0.02235):0.01482):0.0128):0.0099,((GCA_000331515|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_marinum:0.02344,GCA_000940995|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_gaetbulicola:0.07807):0.01334,((GCA_003026475|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_lipolyticum:0.04105,(GCA_000196255|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_profundum:0.05807,(GCA_003025615|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_frigidiphilum:0.01496,GCA_003026215|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_indicum:0.03273):0.02253):0.01631):0.00928,(GCA_001939735|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_proteolyticum:0.03989,(GCA_001650345|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_jeanii:0.04304,(GCA_002265265|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_sanguinicancri:0.01763,GCA_003026435|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Photobacterium|s__Photobacterium_swingsii:0.02019):0.01833):0.00744):0.00842):0.01126):0.00528):0.00858):0.01046,(((GCA_001029395|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Aliivibrio|s__Aliivibrio_fischeri:0.04142,GCA_002954715|k__Bacteria|p__Proteobacteria|c__Gammaproteobacte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diff --git a/inst/scripts/get_mpa_tree_v31.R b/inst/scripts/get_mpa_tree_v31.R index 9d43bc2..1623db0 100644 --- a/inst/scripts/get_mpa_tree_v31.R +++ b/inst/scripts/get_mpa_tree_v31.R @@ -5,6 +5,7 @@ library(ape) library(purrr) library(dplyr) +library(tidyr) column_names <- c( 'genome_id', 'kingdom', 'phylum', 'class', 'order', 'family', 'genus', @@ -15,8 +16,8 @@ taxonomic_ranks <- c( 'superkingdom', 'phylum', 'class', 'order', 'family', 'genus', 'species', 'strain' ) -getMRCA <- function(t, df) { - res <- phytools::findMRCA(t, tips = df[['tip_label']]) +getMRCA <- function(tree, tips) { + res <- phytools::findMRCA(tree = tree, tips = tips) if (is.null(res)) res <- NA res @@ -100,12 +101,29 @@ new_taxonomy <- map(taxonomy, ~ { mpa_data <- left_join(mpa_data, new_taxonomy, by = 'taxid') new_mpa_tree <- mpa_tree +tx <- paste0(taxonomic_ranks, '_taxid') +tx[which(tx == 'superkingdom_taxid')] <- 'kingdom_taxid' + +mrcas <- flatten(map(tx, ~ split(mpa_data, factor(mpa_data[[.x]])))) +mrcas <-map(mrcas, ~ .x[['tip_label']]) +mrcas <- map_int(mrcas, ~ getMRCA(mpa_tree, .x)) +mrcas <- mrcas[!is.na(mrcas)] +mrcas_df <- data.frame(node = unname(mrcas), node_label = names(mrcas)) +mrcas_df <- mrcas_df |> + group_by(node) |> + mutate(n_labels = length(unique(node_label))) |> + mutate(node_label = paste0(unique(node_label), collapse = '+')) |> + ungroup() |> + distinct() + +nodes <- data.frame(node = length(mpa_tree$tip.label) + 1:mpa_tree$Nnode) |> + left_join(mrcas_df, by = 'node') |> + mutate( + node_label = ifelse(is.na(node_label), '', node_label), + n_labels = ifelse(is.na(n_labels), 0, n_labels) + ) - - -## all(mpa_data$tip_label == mpa_tree$tip.label) # just making sure the order is the same - - +mpa_tree$node.label <- nodes$node_label # sp_taxid_dups <- mpa_data$species_taxid[which(duplicated(mpa_data$species_taxid))]