diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index 9eebcb3..dfa8831 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -14,7 +14,7 @@ name: pkgdown jobs: pkgdown: runs-on: ubuntu-latest - container: bioconductor/bioconductor_docker:devel + container: bioconductor/bioconductor_docker:RELEASE_3_18 env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} @@ -35,7 +35,7 @@ jobs: - name: Install package run: R CMD INSTALL . - - name: Build site + - name: Build site run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) shell: Rscript {0} diff --git a/.gitignore b/.gitignore index 391c362..e523310 100644 --- a/.gitignore +++ b/.gitignore @@ -4,3 +4,4 @@ inst/doc docs log* bugphyzz*tsv +inst/picrust/venv diff --git a/DESCRIPTION b/DESCRIPTION index d1db763..8dc8500 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -18,7 +18,12 @@ Suggests: rmarkdown, tibble, sessioninfo, - ggplot2 + ggplot2, + gtable, + ggtree, + ggpubr, + reshape2, + ggimage Imports: ape, BiocFileCache,