From a3979635a42e59e6146b5f7134fdf6080276e7eb Mon Sep 17 00:00:00 2001
From: sdgamboa <samuel.gamboa.tuz@gmail.com>
Date: Thu, 21 Sep 2023 20:13:20 -0400
Subject: [PATCH] update vignette

---
 vignettes/articles/phangorn.Rmd | 17 ++---------------
 1 file changed, 2 insertions(+), 15 deletions(-)

diff --git a/vignettes/articles/phangorn.Rmd b/vignettes/articles/phangorn.Rmd
index 80ba32c..75c517b 100644
--- a/vignettes/articles/phangorn.Rmd
+++ b/vignettes/articles/phangorn.Rmd
@@ -368,23 +368,10 @@ phyData
 ```
 
 ```{r}
-system.time({
-    fit <- pml(pruned_tree, phyData)
-    asr_output <- ancestral.pml(fit, 'ml')
-})
+fit <- pml(pruned_tree, phyData)
+asr_output <- ancestral.pml(fit, 'ml')
 ```
 
-
-
-
-
-
-
-
-
-
-
-
 ```{r}
 system.time(
     fit <- fitMk.parallel(