diff --git a/inst/extdata/livingTree.newick b/inst/extdata/livingTree.newick index 018b0d7..ff2fff2 100644 --- a/inst/extdata/livingTree.newick +++ b/inst/extdata/livingTree.newick @@ -1 +1 @@ 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497449-_Psychrosphaera_aquimarina-_Psychrosphaera_aquimarina-_-KY497449--_SW33_T':0.00767,'AB545807-_Psychrosphaera_saromensis-_Psychrosphaera_saromensis-_-AB545807--_SA4-48_T':0.01054):0.02946,'JX854537-_Psychrosphaera_aestuarii-_Psychrosphaera_aestuarii-_-JX854537--_PSC101_T':0.01326):0.00211,'EU930871-_Psychrosphaera_haliotis-_Psychrosphaera_haliotis-_-EU930871--_KDW4_T':0.00925):0.00849,'MW019962-_Psychrosphaera_ytuae-_Psychrosphaera_ytuae-_-MW019962--_MTZ26_T':0.01883)907197:0.06353):0.00993,(((((((((((((((((((((((('X98336-_Pseudoalteromonas_antarctica-_Pseudoalteromonas_antarctica-_-X98336--_CECT_4664_T':0.00488,'AY040230-_Pseudoalteromonas_translucida-_Pseudoalteromonas_translucida-_-AY040230--_KMM520_T':0.00349):0.00349,'AF529062-_Pseudoalteromonas_fuliginea-_Pseudoalteromonas_fuliginea-_-AF529062--_CIP_105339_T':0.00209):0.00419,'AY387858-_Pseudoalteromonas_aliena-_Pseudoalteromonas_aliena-_-AY387858--_KMM_3562_T':0.00419):0.0014,'AY563031-_Pseudoalteromonas_marina-_Pseudoalteromonas_marina-_-AY563031--_mano4_T':0.02304):0,('X67024-_Pseudoalteromonas_haloplanktis-_Pseudoalteromonas_haloplanktis-_-X67024--_ATCC_14393_T':0.00567,'X82146-_Pseudoalteromonas_nigrifaciens-_Pseudoalteromonas_nigrifaciens-_-X82146--_NCIMB_8614T_T':0):0.0014):0.00558,((('DQ787199-_Pseudoalteromonas_arctica-_Pseudoalteromonas_arctica-_-DQ787199--_A_37-1-2_T':0.00348,'AF082562-_Pseudoalteromonas_elyakovii-_Pseudoalteromonas_elyakovii-_-AF082562--_KMM162T_T':0):0,'AY040229-_Pseudoalteromonas_paragorgicola-_Pseudoalteromonas_paragorgicola-_-AY040229--_KMM3548_T':0.00139):0,'AF082564-_Pseudoalteromonas_distincta-_Pseudoalteromonas_distincta-_-AF082564--_KMM638T_T':0)77608:0):0.0014,'AJ417594-_Pseudoalteromonas_agarivorans-_Pseudoalteromonas_agarivorans-_-AJ417594--_KMM_255_T':0.00209):0.0007,(('AF316144-_Pseudoalteromonas_issachenkonii-_Pseudoalteromonas_issachenkonii-_-AF316144--_KMM_3549-_F13_T':0.00287,'AF214729-_Pseudoalteromonas_tetraodonis-_Pseudoalteromonas_tetraodonis-_-AF214729--_KMM_458_T':0.00419):0.00558,'AB680359-_Pseudoalteromonas_carrageenovora-_Pseudoalteromonas_carrageenovora-_-AB680359--_NBRC_12985_T':0.00209):0.0014):0,'AB681736-_Pseudoalteromonas_espejiana-_Pseudoalteromonas_espejiana-_-AB681736--_NBRC_102222_T':0.00209):0.0014,'AB681913-_Pseudoalteromonas_atlantica-_Pseudoalteromonas_atlantica-_-AB681913--_NBRC_103033_T':0.0007):0,(((('AJ507251-_Pseudoalteromonas_mariniglutinosa-_Pseudoalteromonas_mariniglutinosa-_-AJ507251--_KMM_3635_T':0.0146,'U85855-_Pseudoalteromonas_prydzensis-_Pseudoalteromonas_prydzensis-_-U85855--_MB8-11_T':0.00491):0.00558,'MT271987-_Pseudoalteromonas_ostreae-_Pseudoalteromonas_ostreae-_-MT271987--_hOe-66T':0.00071):0.0021,('KU588400-_Pseudoalteromonas_rhizosphaerae-_Pseudoalteromonas_rhizosphaerae-_-KU588400--_RA15_T':0.0317,'KU716039-_Pseudoalteromonas_neustonica-_Pseudoalteromonas_neustonica-_-KU716039--_PAMC_28425_T':0.00707):0.00071)182141:0.01254,'X82140-_Pseudoalteromonas_undina-_Pseudoalteromonas_undina-_-X82140--_NCIMB_2128T_T':0.0156):0.01898):0.02231,'CP032090-_Pseudoalteromonas_donghaensis-_Pseudoalteromonas_donghaensis-_-CP032090--_HJ51_n[G]_T':0.00278):0.01262,'FJ404721-_Pseudoalteromonas_lipolytica-_Pseudoalteromonas_lipolytica-_-FJ404721--_LMEB_39_T':0.00278):0.01814,'AB576636-_Pseudoalteromonas_arabiensis-_Pseudoalteromonas_arabiensis-_-AB576636--_k53_T':0.00972):0.0028,('KT377064-_Pseudoalteromonas_gelatinilytica-_Pseudoalteromonas_gelatinilytica-_-KT377064--_NH153_T':0,'KT900238-_Pseudoalteromonas_profundi-_Pseudoalteromonas_profundi-_-KT900238--_TP162_T':0.0069):0.03749):0.0021,'AB720724-_Pseudoalteromonas_shioyasakiensis-_Pseudoalteromonas_shioyasakiensis-_-AB720724--_SE3_T':0.00348):0.00631,'AF316891-_Pseudoalteromonas_ruthenica-_Pseudoalteromonas_ruthenica-_-AF316891--_KMM300_T':0.0328):0.00705,'KU535632-_Pseudoalteromonas_amylolytica-_Pseudoalteromonas_amylolytica-_-KU535632--_JW1_T':0.01599):0.0056,(('X82135-_Pseudoalteromonas_aurantia-_Pseudoalteromonas_aurantia-_-X82135--_ATCC_33046T_T':0.00071,'X82137-_Pseudoalteromonas_citrea-_Pseudoalteromonas_citrea-_-X82137--_NCIMB_1889T_T':0.00212):0.04504,'DQ011289-_Pseudoalteromonas_byunsanensis-_Pseudoalteromonas_byunsanensis-_-DQ011289--_FR1199_T':0.02364):0.01552):0.00211,(((((((((('AF144036-_Pseudoalteromonas_maricaloris-_Pseudoalteromonas_maricaloris-_-AF144036--_KMM636-_LMG_19692-_CIP_106859_T':0.0014,'AB681918-_Pseudoalteromonas_piscicida-_Pseudoalteromonas_piscicida-_-AB681918--_NBRC_103038_T':0.0007):0,'AF297958-_Pseudoalteromonas_flavipulchra-_Pseudoalteromonas_flavipulchra-_-AF297958--_NCIMB2033-_KMM_3630-_LMG_20361_T':0):0.0014,'MT514367-_Pseudoalteromonas_galatheae-_Pseudoalteromonas_galatheae-_-MT514367--_S4498T':0.00349):0.0021,'AB681334-_Pseudoalteromonas_peptidolytica-_Pseudoalteromonas_peptidolytica-_-AB681334--_NBRC_101021_T':0.00279):0.014,'X82147-_Pseudoalteromonas_rubra-_Pseudoalteromonas_rubra-_-X82147--_ATCC_29570T_T':0.00927):0.00141,'MT348162-_Pseudoalteromonas_caenipelagi-_Pseudoalteromon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arinomonas_algicida-_-KR003453--_Yeongu_1-4_T':0.00418):0.04143):0.00636,('DQ403809-_Marinomonas_blandensis-_Marinomonas_blandensis-_-DQ403809--_MED121_T':0.02018,'MN173280-_Marinomonas_algicola-_Marinomonas_algicola-_-MN173280--_SM1966_T':0.01949):0.02605):0.00423,'EU188441-_Marinomonas_pollencensis-_Marinomonas_pollencensis-_-EU188441--_IVIA-Po-185_T':0.01812):0.00211):0.01259,'GU929940-_Marinomonas_brasilensis-_Marinomonas_brasilensis-_-GU929940--_R-40503_T':0.01003):0.00772,'AB681910-_Oceanospirillum_vagum-_Oceanospirillum_vagum-_-AB681910--_NBRC_103030_T':0.0112):0.01332,'MG913993-_Marinomonas_piezotolerans-_Marinomonas_piezotolerans-_-MG913993--_ylb-05_T':0.02157):0.00561,((('AJ843077-_Marinomonas_aquimarina-_Marinomonas_aquimarina-_-AJ843077--_11SM4_=_CECT_5080_T':0.00417,'LN909520-_Marinomonas_gallaica-_Marinomonas_gallaica-_-LN909520--_Cmf_17.2_T':0.01388):0.01538,'AB242868-_Marinomonas_ostreistagni-_Marinomonas_ostreistagni-_-AB242868--_UST010306-043_T':0.01113):0.0028,'GU929941-_Marinomonas_communis-_Marinomonas_communis-_-GU929941--_LMG_25279_T':0.01597):0.0049):0.00705,(('MK249693-_Maribrevibacterium_harenarium-_Maribrevibacterium_harenarium-_-MK249693--_HB171799_T':0.03683,'JQ409370-_Marinomonas_fungiae-_Marinomonas_fungiae-_-JQ409370--_AN44_T':0.01559):0.00774,'LN909522-_Marinomonas_atlantica-_Marinomonas_atlantica-_-LN909522--_Cmf_18.22_T':0.02008):0.00212)28253:0.03949,(((((('JX981922-_Bacterioplanes_sanyensis-_Bacterioplanes_sanyensis-_-JX981922--_GYP-2_T':0.04363,'JQ082124-_Bacterioplanoides_pacificum-_Bacterioplanoides_pacificum-_-JQ082124--_sw100_T':0.02575):0.02329,'GQ426888-_Thalassolituus_marinus-_Thalassolituus_marinus-_-GQ426888--_IMCC1826_T':0.0146):0.0007,'OK489464-_Thalassolituus_alkanivorans-_Thalassolituus_alkanivorans-_-OK489464--_TMPB967_T':0.0251):0.00423,('AB682295-_Oleibacter_marinus-_Oleibacter_marinus-_-AB682295--_NBRC_105760_T':0.02026,'AB680865-_Oceanobacter_kriegii-_Oceanobacter_kriegii-_-AB680865--_NBRC_15467_T':0.02028):0.02122):0.01413,'HF680312-_Thalassolituus_oleivorans-_Thalassolituus_oleivorans-_-HF680312--_MIL-1_T':0.02393)187492:0.02337,((('AM747817-_Oceaniserpentilla_haliotis-_Oceaniserpentilla_haliotis-_-AM747817--_DSM_19503_T':0.03081,'AM117931-_Spongiispira_norvegica-_Spongiispira_norvegica-_-AM117931--_Gp_4_7.1_LTP_[T]_T':0.02156):0.01135,'AY136131-_Bermanella_marisrubri-_Bermanella_marisrubri-_-AY136131--_RED65_T':0.04679):0.025,('AJ426420-_Oleispira_antarctica-_Oleispira_antarctica-_-AJ426420--_RB-8_T':0.02039,'EU980447-_Oleispira_lenta-_Oleispira_lenta-_-EU980447--_DFH11_T':0.02017)188907:0.04826):0.02072):0.03058):0.01632,((((((((('AM156910-_Amphritea_atlantica-_Amphritea_atlantica-_-AM156910--_M41_T':0.00214,'MW578282-_Amphritea_pacifica-_Amphritea_pacifica-_-MW578282--_ZJ14W_T':0.01388):0.0084,'MH050426-_Amphritea_opalescens-_Amphritea_opalescens-_-MH050426--_ANRC-JH13_T':0.02014):0.0035,('AB330883-_Amphritea_balenae-_Amphritea_balenae-_-AB330883--_JAMM_1525_T':0.00833,'AB330881-_Amphritea_japonica-_Amphritea_japonica-_-AB330881--_JAMM_1866_T':0.00486):0.00979)515417:0.00423,('GU289646-_Amphritea_spongicola-_Amphritea_spongicola-_-GU289646--_MEBiC05461_T':0.01529,'KJ867528-_Amphritea_ceti-_Amphritea_ceti-_-KJ867528--_RA1_T':0.01807)3018276:0.03235):0.02119,((('FJ713802-_Neptunomonas_antarctica-_Neptunomonas_antarctica-_-FJ713802--_S3-22_T':0.02493,'JF747202-_Neptunomonas_qingdaonensis-_Neptunomonas_qingdaonensis-_-JF747202--_P10-2-4_T':0.01944):0.00141,'AB288092-_Neptunomonas_japonica-_Neptunomonas_japonica-_-AB288092--_JAMM_0745_T':0.01179):0.00982,('JF748732-_Neptunomonas_concharum-_Neptunomonas_concharum-_-JF748732--_LHW37_T':0.02641,'LT223128-_Neptunomonas_marina-_Neptunomonas_marina-_-LT223128--_HPM-16_T':0.02881):0.00989):0.01619):0.00852,'GU569894-_Corallomonas_stylophorae-_Corallomonas_stylophorae-_-GU569894--_KTSW-6_T':0.04871):0.00497,(((((('AB680459-_Oceanospirillum_beijerinckii-_Oceanospirillum_beijerinckii-_-AB680459--_NBRC_13612_T':0.02502,'AB680866-_Oceanospirillum_maris-_Oceanospirillum_maris-_-AB680866--_NBRC_15468_T':0.02426):0.00421,'AB680860-_Oceanospirillum_linum-_Oceanospirillum_linum-_-AB680860--_NBRC_15448_T':0.00555):0.0049,'KF728826-_Oceanospirillum_sanctuarii-_Oceanospirillum_sanctuarii-_-KF728826--_AK56_T':0.0118):0.02687,'AB680461-_Oceanospirillum_multiglobuliferum-_Oceanospirillum_multiglobuliferum-_-AB680461--_NBRC_13614_T':0.03554)965:0.0256,(('KJ000475-_Litoribrevibacter_albus-_Litoribrevibacter_albus-_-KJ000475--_Y32_T':0.02293,'LT555401-_Litoribrevibacter_euphylliae-_Litoribrevibacter_euphylliae-_-LT555401--_Eup_a-2_T':0.01472)1649464:0.00781,'GU391221-_Litoribacillus_peritrichatus-_Litoribacillus_peritrichatus-_-GU391221--_JYr12_T':0.04656):0.03057):0.00927,'KP178167-_Alkalimarinus_sediminis-_Alkalimarinus_sediminis-_-KP178167--_FA028_T':0.04587):0.01278):0.00708,('KF953945-_Motiliproteus_sediminis-_Motiliproteus_sediminis-_-KF953945--_HS6_T':0.02776,'MH071780-_Motiliproteus_coralliicola-_Motiliproteus_coralliic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ensis-_Bartonella_schoenbuchensis-_-AJ278187--_R1_T':0,'AGWA01000019-_Bartonella_bovis-_Bartonella_bovis-_-AGWA01000019--_91-4_T':0.00433):0,'AY254309-_Bartonella_chomelii-_Bartonella_chomelii-_-AY254309--_A828_LTP_[T]_T':0.00439):0.01156,'AF293389-_Bartonella_capreoli-_Bartonella_capreoli-_-AF293389--_IBS_193_T':0):0.00723):0.00289,('AB602530-_Bartonella_callosciuri-_Bartonella_callosciuri-_-AB602530--_BR11-1_T':0.00371,'M11927-_Bartonella_quintana-_Bartonella_quintana-_-M11927--_Fuller_T':0.00937):0.00434):0,'EU111759-_Bartonella_coopersplainsensis-_Bartonella_coopersplainsensis-_-EU111759--_AUST/NH20_T':0.01081):0):0,'LR736793-_Bartonella_refiksaydamii-_Bartonella_refiksaydamii-_-LR736793--_B191_T':0.00288):0.00868,('CP014012-_Bartonella_bacilliformis-_Bartonella_bacilliformis-_-CP014012--_ATCC_35685D-5_n[G]_T':0.01012,'KP720643-_Bartonella_ancashensis-_Bartonella_ancashensis-_-KP720643--_20.00_T':0.00649):0.00507):0.00073,('DQ683196-_Bartonella_rochalimae-_Bartonella_rochalimae-_-DQ683196--_BMGH_T':0.00579,'X89208-_Bartonella_clarridgeiae-_Bartonella_clarridgeiae-_-X89208--_ATCC_51734_T':0.00506):0.01233):0.00513,'KP987884-_Bartonella_apis-_Bartonella_apis-_-KP987884--_PEB0122_T':0.01948)772+773:0.0226):0.00583)13159:0.00874,((((((('AY636000-_Phyllobacterium_catacumbae-_Phyllobacterium_catacumbae-_-AY636000--_CSC19_T':0.00435,'AY785325-_Phyllobacterium_ifriqiyense-_Phyllobacterium_ifriqiyense-_-AY785325--_STM_370_T':0.00145):0.01739,('KC577468-_Phyllobacterium_loti-_Phyllobacterium_loti-_-KC577468--_S658_T':0.02746,'AY786080-_Phyllobacterium_trifolii-_Phyllobacterium_trifolii-_-AY786080--_PETP02_T':0.00072):0):0.0116,'AY785320-_Phyllobacterium_bourgognense-_Phyllobacterium_bourgognense-_-AY785320--_STM_201_T':0.00289):0.00435,('JN848778-_Phyllobacterium_endophyticum-_Phyllobacterium_endophyticum-_-JN848778--_PEPV15_T':0.01297,'KX426256-_Phyllobacterium_zundukense-_Phyllobacterium_zundukense-_-KX426256--_Tri-48_T':0.01335):0.00145):0.0029,('AY785319-_Phyllobacterium_brassicacearum-_Phyllobacterium_brassicacearum-_-AY785319--_STM_196_T':0.00072,'KJ685937-_Phyllobacterium_sophorae-_Phyllobacterium_sophorae-_-KJ685937--_CCBAU_03422_T':0.00804):0.00725):0.0029,'AB681132-_Phyllobacterium_myrsinacearum-_Phyllobacterium_myrsinacearum-_-AB681132--_NBRC_100019_T':0.00723):0.0131,(('AJ968695-_Phyllobacterium_leguminum-_Phyllobacterium_leguminum-_-AJ968695--_ORS_1419_T':0.02023,'LT614649-_Phyllobacterium_salinisoli-_Phyllobacterium_salinisoli-_-LT614649--_LLAN61_T':0.00289):0.00073,'MG706142-_Phyllobacterium_phragmitis-_Phyllobacterium_phragmitis-_-MG706142--_1N-3_T':0.0101):0.00872)28100:0.00583):0.00146,('JX430025-_Liberibacter_crescens-_Liberibacter_crescens-_-JX430025--_BT-1_T':0.08772,('KJ577584-_Tianweitania_sediminis-_Tianweitania_sediminis-_-KJ577584--_Z8_T':0.00723,'KP170489-_Corticibacterium_populi-_Corticibacterium_populi-_-KP170489--_16B10-2-7_T':0.01448):0.02134):0.00809)82115:0.00146,(('HG965759-_Hoeflea_olei-_Hoeflea_olei-_-HG965759--_JC234_T':0.01302,('AJ786600-_Hoeflea_alexandrii-_Hoeflea_alexandrii-_-AJ786600--_AM1V30_T':0.00145,'GU564401-_Hoeflea_halophila-_Hoeflea_halophila-_-GU564401--_JG120-1_T':0.01227):0.00291):0.0029,((('JX139717-_Lentilitoribacter_donghaensis-_Lentilitoribacter_donghaensis-_-JX139717--_BH-4_T':0.03605,'ABIA02000018-_Hoeflea_phototrophica-_Hoeflea_phototrophica-_-ABIA02000018--_DFL-43_T':0.00433):0.01536,'AY598817-_Hoeflea_marina-_Hoeflea_marina-_-AY598817--_LMG_128_T':0.00866):0.00948,'DQ364238-_Hoeflea_anabaenae-_Hoeflea_anabaenae-_-DQ364238--_WH2K_T':0.02095):0.00876)274591:0.00728):0.01166,(((((('ARFW01000012-_Ahrensia_kielensis-_Ahrensia_kielensis-_-ARFW01000012--_DSM_5890_T':0.02621,'KJ700633-_Ahrensia_marina-_Ahrensia_marina-_-KJ700633--_LZD062_T':0.01084)152180:0.02487,('GU575117-_Pseudahrensia_aquimaris-_Pseudahrensia_aquimaris-_-GU575117--_HDW-32_T':0.00722,'KM273259-_Pseudahrensia_todarodis-_Pseudahrensia_todarodis-_-KM273259--_KHS02_T':0.0065)1434035:0.02805)2829814:0.01462,'EU143347-_Nitratireductor_basaltis-_Nitratireductor_basaltis-_-EU143347--_J3_T':0.01613):0.00512,(((('KF582604-_Oricola_cellulosilytica-_Oricola_cellulosilytica-_-KF582604--_CC-AMH-0_T':0.02019,'MW922723-_Oricola_indica-_Oricola_indica-_-MW922723--_JL-62_T':0.01082):0.00219,'MK990012-_Oricola_thermophila-_Oricola_thermophila-_-MK990012--_MEBiC13590_T':0.00528)1594166:0.00727,'KX268598-_Roseitalea_porphyridii-_Roseitalea_porphyridii-_-KX268598--_MA7-20_T':0.03333):0.00147,'HM800935-_Pseudohoeflea_suaedae-_Pseudohoeflea_suaedae-_-HM800935--_YC6898_T':0.02816):0.00656):0.00219,'MF629007-_Oceaniradius_stylonematis-_Oceaniradius_stylonematis-_-MF629007--_StC1_T':0.01301):0.00802,((((((('AF072542-_Pseudaminobacter_salicylatoxidans-_Pseudaminobacter_salicylatoxidans-_-AF072542--_BN12_T':0.01158,'KX066102-_Pseudaminobacter_granuli-_Pseudaminobacter_granuli-_-KX066102--_Gr-2_T':0.00289):0.00218,'KX129748-_Pseudaminobacter_arsenicus-_Pseudaminobacter_arsenicus-_-KX129748--_CB3_T':0.00941):0.00581,'AB6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romonospora_endophytica-_Micromonospora_endophytica-_-EU560726--_202201_T':0.00637,'LC177517-_Micromonospora_radicis-_Micromonospora_radicis-_-LC177517--_AZ1-13_T':0.00283):0):0.00425,((('EU427445-_Micromonospora_qiuiae-_Micromonospora_qiuiae-_-EU427445--_RtIII47_T':0.00777,'KT633950-_Verrucosispora_sonchi-_Verrucosispora_sonchi-_-KT633950--_NEAU-QY3_T':0.00353):0.01418,'JQ073732-_Micromonospora_phaseoli-_Micromonospora_phaseoli-_-JQ073732--_NEAU-J5_T':0.00565):0.00426,'D63912-_Spirilliplanes_yamanashiensis-_Spirilliplanes_yamanashiensis-_-D63912--_IFO_15828_T':0.01771):0.00426):0.00283):0.00354,((((((('MH973615-_Salinispora_fenicalii-_Salinispora_fenicalii-_-MH973615--_CNT-569_T':0.00142,'DQ224161-_Salinispora_pacifica-_Salinispora_pacifica-_-DQ224161--_CNR-114_T':0.00071):0.00071,('MH973617-_Salinispora_goodfellowii-_Salinispora_goodfellowii-_-MH973617--_CNY-666_T':0,'HQ642899-_Salinispora_vitiensis-_Salinispora_vitiensis-_-HQ642899--_CNT-148_T':0):0.00141):0,(('MH973616-_Salinispora_cortesiana-_Salinispora_cortesiana-_-MH973616--_CNY-202_T':0.00213,'HQ642900-_Salinispora_mooreana-_Salinispora_mooreana-_-HQ642900--_CNT-150_T':0.00284):0,'HQ642852-_Salinispora_oceanensis-_Salinispora_oceanensis-_-HQ642852--_CNT-029_T':0.00075):0):0.00213,('AY040617-_Salinispora_tropica-_Salinispora_tropica-_-AY040617--_CNB440_T':0.00142,'AY040619-_Salinispora_arenicola-_Salinispora_arenicola-_-AY040619--_CNH-643_T':0.00424):0.00142)168694:0.0156,'MG770841-_Micromonospora_deserti-_Micromonospora_deserti-_-MG770841--_13K206_T':0.0113):0.00996,'FJ261956-_Micromonospora_rhizosphaerae-_Micromonospora_rhizosphaerae-_-FJ261956--_211018_T':0.00989):0.00213,'MK088238-_Micromonospora_tarapacensis-_Micromonospora_tarapacensis-_-MK088238--_Llam7T':0.00565):0.00567):0.00142,(((((((((((((((('FN658633-_Micromonospora_luteifusca-_Micromonospora_luteifusca-_-FN658633--_GUI2_T':0.00356,'KU997023-_Micromonospora_parathelypteridis-_Micromonospora_parathelypteridis-_-KU997023--_NEAU-JXY5_T':0.00283):0.00568,'KF956808-_Micromonospora_vulcania-_Micromonospora_vulcania-_-KF956808--_NEAU-JM2_T':0.0092):0.00142,('FN658649-_Micromonospora_noduli-_Micromonospora_noduli-_-FN658649--_GUI43_T':0.00356,'FN658651-_Micromonospora_vinacea-_Micromonospora_vinacea-_-FN658651--_GUI63_T':0.0043):0.00213):0,('MG725912-_Micromonospora_arida-_Micromonospora_arida-_-MG725912--_LB32_T':0.00071,'KF494813-_Micromonospora_profundi-_Micromonospora_profundi-_-KF494813--_DS3010_T':0.00283):0.00142):0,(('FN658656-_Micromonospora_zamorensis-_Micromonospora_zamorensis-_-FN658656--_CR38_T':0.00993,'FN658641-_Micromonospora_ureilytica-_Micromonospora_ureilytica-_-FN658641--_GUI23_T':0.00213):0.00496,'AJ783993-_Micromonospora_saelicesensis-_Micromonospora_saelicesensis-_-AJ783993--_Lupac_09_T':0.00141):0):0.00566,(('AB241454-_Micromonospora_chokoriensis-_Micromonospora_chokoriensis-_-AB241454--_2-19-6-_T':0,'KC161209-_Micromonospora_violae-_Micromonospora_violae-_-KC161209--_NEAU-zh8_T':0.00212):0.00142,'MG725913-_Micromonospora_inaquosa-_Micromonospora_inaquosa-_-MG725913--_LB39_T':0.00071):0)1876:0.00142,'KC439463-_Micromonospora_taraxaci-_Micromonospora_taraxaci-_-KC439463--_NEAU-P5_T':0.00495):0.00426,'AJ783996-_Micromonospora_lupini-_Micromonospora_lupini-_-AJ783996--_Lupac_14N_T':0.0057):0.00355,'KF494805-_Micromonospora_orduensis-_Micromonospora_orduensis-_-KF494805--_S2509_T':0.00212):0.00355,'FJ772077-_Micromonospora_fulva-_Micromonospora_fulva-_-FJ772077--_UDF-1_T':0.0099):0.0071,((((('X92604-_Micromonospora_aurantiaca-_Micromonospora_aurantiaca-_-X92604--_DSM_43813_LTP_[T]_T':0.00354,'X92594-_Micromonospora_chalcea-_Micromonospora_chalcea-_-X92594--_DSM_43026_LTP_[T]_T':0.00708):0.00354,'AB196712-_Micromonospora_marina-_Micromonospora_marina-_-AB196712--_JSM1-1_T':0.00283):0.00142,('HQ704071-_Micromonospora_maritima-_Micromonospora_maritima-_-HQ704071--_D10-9-5_T':0,'AB609324-_Micromonospora_sediminicola-_Micromonospora_sediminicola-_-AB609324--_SH2-13_T':0.00216):0.00142):0.00566,('AB889541-_Micromonospora_sediminis-_Micromonospora_sediminis-_-AB889541--_CH3-3_T':0.00706,'KF818390-_Micromonospora_globispora-_Micromonospora_globispora-_-KF818390--_S2901_T':0.00707):0.00426):0,'X92601-_Micromonospora_halophytica-_Micromonospora_halophytica-_-X92601--_DSM_43171_LTP_[T]_T':0.00425):0.00426):0,((((('FN658669-_Micromonospora_luteiviridis-_Micromonospora_luteiviridis-_-FN658669--_SGB14_T':0.00496,'X92611-_Micromonospora_purpureochromogenes-_Micromonospora_purpureochromogenes-_-X92611--_DSM_43821_LTP_[T]_T':0.00353):0.00212,('HQ174560-_Micromonospora_nickelidurans-_Micromonospora_nickelidurans-_-HQ174560--_K55_T':0.00646,'KF887911-_Micromonospora_palomenae-_Micromonospora_palomenae-_-KF887911--_NEAU-CX1_T':0.00282):0.00849):0,'AB241455-_Micromonospora_coxensis-_Micromonospora_coxensis-_-AB241455--_2-30-b-28-_T':0.00141):0,'FN658661-_Micromonospora_phytophila-_Micromonospora_phytophila-_-FN658661--_SG15_T':0.00645):0.00354,('MW003705-_Micromonospora_ferruginea-_Micromonospor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arinus-_Gaetbulibacter_marinus-_-EF108219--_IMCC1914_T':0.00987):0.02422):0.00998)311207:0.01564,((((((((('KY310668-_Flaviramulus_aestuariivivens-_Flaviramulus_aestuariivivens-_-KY310668--_OITF-51_T':0.02468,'JX412958-_Wocania_ichthyoenteri-_Wocania_ichthyoenteri-_-JX412958--_Th78_T':0.01903):0.00501,'JQ687104-_Flaviramulus_aquimarinus-_Flaviramulus_aquimarinus-_-JQ687104--_KYW499_T':0.02748):0.00786,'DQ361033-_Flaviramulus_basaltis-_Flaviramulus_basaltis-_-DQ361033--_H35_T':0.02377):0.00784,(('HM475134-_Algibacter_pectinivorans-_Algibacter_pectinivorans-_-HM475134--_JC2675_T':0.02539,'KP136798-_Algibacter_amylolyticus-_Algibacter_amylolyticus-_-KP136798--_RU-4-M-4_T':0.01312):0.01501,'MF040694-_Changchengzhania_lutea-_Changchengzhania_lutea-_-MF040694--_SM1355_T':0.03315):0.00643):0.00143,(('JN864025-_Algibacter_agarivorans-_Algibacter_agarivorans-_-JN864025--_KYW560_T':0.02125,'KJ475138-_Algibacter_psychrophilus-_Algibacter_psychrophilus-_-KJ475138--_PAMC_27237_T':0.01831):0.00071,'JN864027-_Algibacter_agarilyticus-_Algibacter_agarilyticus-_-JN864027--_KYW563_T':0.02191):0.00498):0.00355,('MH000433-_Algibacter_marinivivus-_Algibacter_marinivivus-_-MH000433--_ZY111_T':0.01991,'KC618395-_Sabulilitoribacter_multivorans-_Sabulilitoribacter_multivorans-_-KC618395--_M-M16_T':0.02898):0.00643)369400:0.00213,('KM502325-_Algibacter_aquaticus-_Algibacter_aquaticus-_-KM502325--_SK-16_T':0.04985,'KX343046-_Sabulilitoribacter_arenilitoris-_Sabulilitoribacter_arenilitoris-_-KX343046--_HMF6543_T':0.02535):0.00573):0.00711,(((((((('MN955402-_Hyunsoonleella_aquatilis-_Hyunsoonleella_aquatilis-_-MN955402--_SJ7T':0.02962,'KR528480-_Hyunsoonleella_rubra-_Hyunsoonleella_rubra-_-KR528480--_FA042_T':0.01831):0.01446,'KP341540-_Aestuariivivens_insulae-_Aestuariivivens_insulae-_-KP341540--_AH-MY3_T':0.04863):0.02436,'MK616102-_Hyunsoonleella_flava-_Hyunsoonleella_flava-_-MK616102--_T58_T':0.01622):0.00357,'MW527409-_Hyunsoonleella_ulvae-_Hyunsoonleella_ulvae-_-MW527409--_HU1-3_T':0.01904):0.00853,'JX501247-_Hyunsoonleella_pacifica-_Hyunsoonleella_pacifica-_-JX501247--_SW033_T':0.01338):0.01213,('EF217419-_Hyunsoonleella_jejuensis-_Hyunsoonleella_jejuensis-_-EF217419--_CNU004_T':0.02114,'KP271448-_Hyunsoonleella_udonensis-_Hyunsoonleella_udonensis-_-KP271448--_JG48_T':0.0275):0.00716):0.02554,('HQ405792-_Marinivirga_aestuarii-_Marinivirga_aestuarii-_-HQ405792--_KYW371_T':0.0134,'MH532523-_Algibacter_onchidii-_Algibacter_onchidii-_-MH532523--_XY-114T':0.02645):0.00573)1080193:0.00571,'JQ807811-_Arenitalea_lutea-_Arenitalea_lutea-_-JQ807811--_P7-3-5_T':0.01901):0.00569):0.00429,'HQ336487-_Postechiella_marina-_Postechiella_marina-_-HQ336487--_M091_T':0.03526):0.00286)261827+2834400:0.00855,(((((((('DQ167239-_Lacinutrix_mariniflava-_Lacinutrix_mariniflava-_-DQ167239--_AKS432_T':0.00924,'DQ167238-_Lacinutrix_algicola-_Lacinutrix_algicola-_-DQ167238--_AKS293_T':0.00282):0.01559,('HG970752-_Lacinutrix_venerupis-_Lacinutrix_venerupis-_-HG970752--_Cmf_20.8_T':0.01634,'KT272396-_Lacinutrix_chionoecetis-_Lacinutrix_chionoecetis-_-KT272396--_MAB-07_T':0.01348):0.01068):0.00285,'KF977035-_Lacinutrix_jangbogonensis-_Lacinutrix_jangbogonensis-_-KF977035--_PAMC_27137_T':0.01414):0.00356,(((('AY694001-_Lacinutrix_copepodicola-_Lacinutrix_copepodicola-_-AY694001--_DJ3_T':0.01467,'FN377744-_Lacinutrix_himadriensis-_Lacinutrix_himadriensis-_-FN377744--_E4-9a_T':0.00919):0.02062,'KT350410-_Lacinutrix_gracilariae-_Lacinutrix_gracilariae-_-KT350410--_Lxc1_T':0.02183):0.00143,'KU510085-_Lacinutrix_cladophorae-_Lacinutrix_cladophorae-_-KU510085--_7Alg_4_T':0.00846):0.01281,'JX412960-_Lacinutrix_iliipiscaria-_Lacinutrix_iliipiscaria-_-JX412960--_Th68_T':0.02391):0.01353):0.00142,'LC339518-_Lacinutrix_salivirga-_Lacinutrix_salivirga-_-LC339518--_KMU-57_T':0.01269):0,((('FJ886713-_Olleya_aquimaris-_Olleya_aquimaris-_-FJ886713--_L-4_T':0.0134,'MN872416-_Olleya_sediminilitoris-_Olleya_sediminilitoris-_-MN872416--_YSTF-M6_T':0.01128):0.00781,'JQ327134-_Olleya_namhaensis-_Olleya_namhaensis-_-JQ327134--_WT-MY15_T':0.00989):0.01849,('JN175350-_Olleya_marilimosa-_Olleya_marilimosa-_-JN175350--_CIP_108537_T':0.00795,'KY341922-_Olleya_algicola-_Olleya_algicola-_-KY341922--_3Alg_18_T':0.00282):0.00569)336276:0.01922):0.01283,'MK051221-_Pontimicrobium_aquaticum-_Pontimicrobium_aquaticum-_-MK051221--_CAU_1491_T':0.03026):0.00644,(('EU443204-_Jejuia_pallidilutea-_Jejuia_pallidilutea-_-EU443204--_EM39_T':0.02968,'KP271449-_Jejuia_marina-_Jejuia_marina-_-KP271449--_JH03_T':0.02608)762551:0.02303,'CP025791-_Flavivirga_eckloniae-_Flavivirga_eckloniae-_-CP025791--_ECD14_n[G]_T':0.03178):0.01859):0.00215):0.00286):0.00214,(((('HM475139-_Flavivirga_jejuensis-_Flavivirga_jejuensis-_-HM475139--_JC2682_T':0.01556,'KX245374-_Flavivirga_aquimarina-_Flavivirga_aquimarina-_-KX245374--_EC2D5_T':0.02049):0.00357,'MK311254-_Flavivirga_rizhaonensis-_Flavivirga_rizhaonensis-_-MK311254--_RZ03_T':0.01554):0.00713,'HM475138-_Flavivirga_amylovorans-_Flavivirga_amylovorans-_-HM475138--_JC2681_T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ensis-_-AB078055--_IFO_16041_T':0.01823):0.00925,'FM865977-_Chitinophaga_rupis-_Chitinophaga_rupis-_-FM865977--_CS5-B1_T':0.01419):0.01703):0.00644,(((((((('FJ750951-_Chitinophaga_eiseniae-_Chitinophaga_eiseniae-_-FJ750951--_YC6729_T':0.0021,'LC624766-_Chitinophaga_oryzae-_Chitinophaga_oryzae-_-LC624766--_1303_T':0.00421):0.00282,('MN661190-_Chitinophaga_fulva-_Chitinophaga_fulva-_-MN661190--_G-6-1-13_T':0.01262,'MF685226-_Chitinophaga_varians-_Chitinophaga_varians-_-MF685226--_10-7W-9003_T':0.01053):0.00353):0.00705,'KF150484-_Chitinophaga_qingshengii-_Chitinophaga_qingshengii-_-KF150484--_JN246_T':0.00771):0.01134,'MH553387-_Chitinophaga_flava-_Chitinophaga_flava-_-MH553387--_K3CV102501_T':0.02949):0.01348,('MT363191-_Chitinophaga_extrema-_Chitinophaga_extrema-_-MT363191--_Mgbs1_T':0.0014,'JX462656-_Chitinophaga_solisilvae-_Chitinophaga_solisilvae-_-JX462656--_O9_T':0)1233460:0.00564):0.00141,(('KM389531-_Chitinophaga_dinghuensis-_Chitinophaga_dinghuensis-_-KM389531--_DHOC24_T':0.0112,'KF150362-_Chitinophaga_jiangningensis-_Chitinophaga_jiangningensis-_-KF150362--_JN53_T':0.01427):0.00919,('MH553386-_Chitinophaga_silvatica-_Chitinophaga_silvatica-_-MH553386--_K2CV101002-2_T':0.00631,'AB278570-_Chitinophaga_terrae-_Chitinophaga_terrae-_-AB278570--_KP01_T':0.00842):0.00565):0.00141):0.00284,'MK828556-_Chitinophaga_vietnamensis-_Chitinophaga_vietnamensis-_-MK828556--_BD_01_T':0.02863):0.00781,(((('AB264798-_Chitinophaga_ginsengisegetis-_Chitinophaga_ginsengisegetis-_-AB264798--_Gsoil_040_T':0.00561,'KC479802-_Chitinophaga_taiwanensis-_Chitinophaga_taiwanensis-_-KC479802--_CC-ALB-1_T':0.02947):0.00283,'AB680728-_Chitinophaga_arvensicola-_Chitinophaga_arvensicola-_-AB680728--_NBRC_14973_T':0.00562):0.00353,(('KC430923-_Chitinophaga_polysaccharea-_Chitinophaga_polysaccharea-_-KC430923--_MRP-15_T':0.01285,'KJ579707-_Chitinophaga_longshanensis-_Chitinophaga_longshanensis-_-KJ579707--_Z29_T':0.01052):0.01273,'EU714260-_Chitinophaga_niastensis-_Chitinophaga_niastensis-_-EU714260--_JS16-4_T':0.01355):0):0.00564,'MZ033001-_Chitinophaga_hostae-_Chitinophaga_hostae-_-MZ033001--_2R12_T':0.00651):0.00708):0.01499)79328:0.02365):0.0217,(((('EU370955-_Arachidicoccus_ginsenosidivorans-_Arachidicoccus_ginsenosidivorans-_-EU370955--_Gsoil_809_T':0.01402,'MZ951123-_Arachidicoccus_terrestris-_Arachidicoccus_terrestris-_-MZ951123--_5GH13-10_T':0.01191):0.00353,'EU672808-_Arachidicoccus_rhizosphaerae-_Arachidicoccus_rhizosphaerae-_-EU672808--_Vu-144_T':0.00857):0.00922,'MH933978-_Arachidicoccus_soli-_Arachidicoccus_soli-_-MH933978--_KIS59-12_T':0.01822)1769012:0.02157,'KX146486-_Haoranjiania_flava-_Haoranjiania_flava-_-KX146486--_LIP-5_T':0.04979):0.03984):0.01975,(((((('KC571459-_Taibaiella_smilacinae-_Taibaiella_smilacinae-_-KC571459--_PTJT-5_T':0.02724,'KM598262-_Taibaiella_yonginensis-_Taibaiella_yonginensis-_-KM598262--_THG-SC4_T':0.03805):0.01593,'KF694752-_Taibaiella_chishuiensis-_Taibaiella_chishuiensis-_-KF694752--_AY17_T':0.02472):0.00573,'KM505048-_Taibaiella_coffeisoli-_Taibaiella_coffeisoli-_-KM505048--_TZCO2_T':0.03399):0.0043,(('KC252613-_Taibaiella_koreensis-_Taibaiella_koreensis-_-KC252613--_THG-DT86_T':0.01009,'MH734926-_Taibaiella_helva-_Taibaiella_helva-_-MH734926--_F-4_T':0.02327):0.00927,'KR078254-_Taibaiella_soli-_Taibaiella_soli-_-KR078254--_T1-10_T':0.01975):0.00286)1434702:0.01668,'MF417833-_Edaphocola_aurantiacus-_Edaphocola_aurantiacus-_-MF417833--_H2_T':0.05438):0.04199,((('MF156860-_Flavipsychrobacter_stenotrophus-_Flavipsychrobacter_stenotrophus-_-MF156860--_RB1R16_T':0.02737,'KY233199-_Nemorincola_caseinilytica-_Nemorincola_caseinilytica-_-KY233199--_J116-2_T':0.03735):0.01446,'KY828215-_Edaphobaculum_flavum-_Edaphobaculum_flavum-_-KY828215--_1-116_T':0.05123):0.00288,('KU497556-_Mucibacter_soli-_Mucibacter_soli-_-KU497556--_R1-15_T':0.06092,'KY233200-_Rurimicrobium_arvi-_Rurimicrobium_arvi-_-KY233200--_J107-1_T':0.0766):0.01316):0.01298):0.02212)1853228+1853229+563835:0.06596,((((((((('AM286229-_Lewinella_agarilytica-_Lewinella_agarilytica-_-AM286229--_SST-19_T':0.03412,'MK235141-_Lewinella_aurantiaca-_Lewinella_aurantiaca-_-MK235141--_SSH13_T':0.03158):0.01223,'AB301616-_Lewinella_persica-_Lewinella_persica-_-AB301616--_NBRC_102663_T':0.04003):0.00574,('EF554367-_Lewinella_antarctica-_Lewinella_antarctica-_-EF554367--_IMCC3223_T':0.0451,'AB681892-_Lewinella_lutea-_Lewinella_lutea-_-AB681892--_NBRC_102634_T':0.05354):0.00939):0.00936,'KM017082-_Lewinella_lacunae-_Lewinella_lacunae-_-KM017082--_HME9359_T':0.03808):0.01158,((('MK761173-_Lewinella_litorea-_Lewinella_litorea-_-MK761173--_HSMS-39_T':0.01689,'AB681891-_Lewinella_marina-_Lewinella_marina-_-AB681891--_NBRC_102633_T':0.00774):0.01777,('KX084062-_Lewinella_aquimaris-_Lewinella_aquimaris-_-KX084062--_HDW-36_T':0.02461,'KF385496-_Lewinella_maritima-_Lewinella_maritima-_-KF385496--_HME9321_T':0.04126):0.0086):0.00789,'KJ573521-_Lewinella_xylanilytica-_Lewinella_xylanilytica-_-KJ573521--_13-9-B8_T':0.02604):0.03462)2993541:0.03127,'AB301614-_Le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oplanus_natans-_-AB663396--_JCM_14081_T':0.0088,'KM360176-_Haloplanus_rubicundus-_Haloplanus_rubicundus-_-KM360176--_CBA1112_T':0.01026):0.00369,'EU931578-_Haloplanus_vescus-_Haloplanus_vescus-_-EU931578--_RO5-8_T':0.01467):0.00294,'GQ282625-_Haloplanus_aerogenes-_Haloplanus_aerogenes-_-GQ282625--_TBN37_T':0.00955):0.00222,'JQ237126-_Haloplanus_salinus-_Haloplanus_salinus-_-JQ237126--_YGH66_T':0.0183):0.0097,((('MH134498-_Haloplanus_rallus-_Haloplanus_rallus-_-MH134498--_MBLA0036_T':0.00146,'KX151776-_Haloplanus_salinarum-_Haloplanus_salinarum-_-KX151776--_SP28_T':0.00146):0.01105,'HM159597-_Haloplanus_ruber-_Haloplanus_ruber-_-HM159597--_R35_T':0.01684):0.01109,'HM063950-_Haloplanus_litoreus-_Haloplanus_litoreus-_-HM063950--_GX21_T':0.01756):0.00597)376170:0.05509):0.00301,((((('FN594944-_Halogranum_salarium-_Halogranum_salarium-_-FN594944--_B-1_T':0.00147,'EU887283-_Halogranum_rubrum-_Halogranum_rubrum-_-EU887283--_RO2-11_T':0.00807):0.01916,'GQ282623-_Halogranum_amylolyticum-_Halogranum_amylolyticum-_-GQ282623--_TNN58_T':0.02063):0.00373,'GQ282624-_Halogranum_gelatinilyticum-_Halogranum_gelatinilyticum-_-GQ282624--_TNN44_T':0.02736)695982:0.03944,(('KJ999759-_Haloprofundus_marisrubri-_Haloprofundus_marisrubri-_-KJ999759--_SB9_T':0.01637,'KM453697.2-_Haloprofundus_halophilus-_Haloprofundus_halophilus-_-KM453697.2--_NK23_T':0.01243)1911573:0.02299,('MK282755-_Halegenticoccus_tardaugens-_Halegenticoccus_tardaugens-_-MK282755--_SYSU_A00711_T':0.03655,'KX752787-_Halegenticoccus_soli-_Halegenticoccus_soli-_-KX752787--_SYSU_A9-0_T':0.04313)2663399:0.009):0.00448):0.00827,('KC918818-_Halobium_salinum-_Halobium_salinum-_-KC918818--_YJ-8-S_T':0.02075,'LC109314-_Halobium_palmae-_Halobium_palmae-_-LC109314--_2a_47_2_T':0.02489)2033608:0.04095):0.00375):0.00822,((((((((((('AB663383-_Haloferax_volcanii-_Haloferax_volcanii-_-AB663383--_JCM_8879_T':0.00146,'AB037474-_Haloferax_alexandrinus-_Haloferax_alexandrinus-_-AB037474--_TM_T':0.00146):0.00293,'AB663381-_Haloferax_prahovense-_Haloferax_prahovense-_-AB663381--_JCM_13924_T':0.00292):0,'D13378-_Haloferax_gibbonsii-_Haloferax_gibbonsii-_-D13378--_ATCC_33959_T':0.00806):0.0022,'AB081732-_Haloferax_lucentense-_Haloferax_lucentense-_-AB081732--_JCM_9276_T':0.00146):0.00366,'AB663374-_Haloferax_denitrificans-_Haloferax_denitrificans-_-AB663374--_JCM_8864_T':0.00146):0.00147,'JX669135-_Haloferax_chudinovii-_Haloferax_chudinovii-_-JX669135--_RS75_T':0.00292):0.00147,'AB663382-_Haloferax_sulfurifontis-_Haloferax_sulfurifontis-_-AB663382--_JCM_12327_T':0.02052):0.00662,('CP001868-_Haloferax_mediterranei-_Haloferax_mediterranei-_-CP001868--_CGMCC_1.2087_T':0.00879,'AOLN01000016-_Haloferax_mucosum-_Haloferax_mucosum-_-AOLN01000016--_ATCC_BAA-1512_T':0.00293):0.00442):0.00296,(('AB477972-_Haloferax_elongans-_Haloferax_elongans-_-AB477972--_JCM_14791_T':0.00954,'AY838278-_Haloferax_larsenii-_Haloferax_larsenii-_-AY838278--_ZJ206_T':0.00147):0.0162,'KT970727-_Haloferax_namakaokahaiae-_Haloferax_namakaokahaiae-_-KT970727--_Mke2.3_T':0.01834):0.00817)2251:0.03112,((((((('AB935406-_Halobellus_litoreus-_Halobellus_litoreus-_-AB935406--_JCM_17118_T':0.01608,'JQ237123-_Halobellus_rarus-_Halobellus_rarus-_-JQ237123--_YC21_T':0.00439):0.00515,'AB771430-_Halobellus_salinus-_Halobellus_salinus-_-AB771430--_JCM_14359_T':0.00877):0.00813,('KF314040-_Halobellus_rufus-_Halobellus_rufus-_-KF314040--_CBA1103_T':0.01463,'MG097862-_Halobellus_captivus-_Halobellus_captivus-_-MG097862--_ZY21_T':0.01461):0.01481):0.01037,('JQ910929-_Halobellus_ramosii-_Halobellus_ramosii-_-JQ910929--_S2FP14_T':0.00146,('JQ237122-_Halobellus_inordinatus-_Halobellus_inordinatus-_-JQ237122--_YC20_T':0.01462,'HM165235-_Haloquadratum_walsbyi-_Haloquadratum_walsbyi-_-HM165235--_C23_T':0.06955):0.02245):0.02356):0.00223,('GQ282620-_Halobellus_clavatus-_Halobellus_clavatus-_-GQ282620--_TNN18_T':0.0488,'AB771429-_Halobellus_limi-_Halobellus_limi-_-AB771429--_JCM_16811_T':0.04088):0.0127)1073986:0.00817,((('AF002984-_Halogeometricum_borinquense-_Halogeometricum_borinquense-_-AF002984--_PR_3_T':0.03229,'EU887286-_Halogeometricum_rufum-_Halogeometricum_rufum-_-EU887286--_RO1-4_T':0.00658):0.00812,'HM185493-_Halogeometricum_pallidum-_Halogeometricum_pallidum-_-HM185493--_BZ256_T':0.01469):0.01331,'AB663428-_Halogeometricum_limi-_Halogeometricum_limi-_-AB663428--_JCM_16054_T':0.01681)60846:0.01333):0.00372,(('JQ996497-_Halopelagius_fulvigenes-_Halopelagius_fulvigenes-_-JQ996497--_YIM_94188_T':0.00512,'JX518988-_Halopelagius_longus-_Halopelagius_longus-_-JX518988--_BC12-B1_T':0.00512):0.00739,'EU887284-_Halopelagius_inordinatus-_Halopelagius_inordinatus-_-EU887284--_RO5-2_T':0.00958)1008195:0.02807):0.00523):0.00747,(((((('KJ689297-_Halolamina_litorea-_Halolamina_litorea-_-KJ689297--_YJ-41_T':0.00731,'KF314044-_Halolamina_rubra-_Halolamina_rubra-_-KF314044--_CBA1107_T':0.00731):0.00737,('JX192605-_Halolamina_salina-_Halolamina_salina-_-JX192605--_WSY15-H3_T':0.00951,'KJ573433-_Halolamina_sediminis-_Halolamina_sediminis-_-KJ573433--_h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545807--_SA4-48_T':0.01054)n19738:0.02946,'JX854537-_Psychrosphaera_aestuarii-_Psychrosphaera_aestuarii-_-JX854537--_PSC101_T':0.01326)n19737:0.00211,'EU930871-_Psychrosphaera_haliotis-_Psychrosphaera_haliotis-_-EU930871--_KDW4_T':0.00925)n19736:0.00849,'MW019962-_Psychrosphaera_ytuae-_Psychrosphaera_ytuae-_-MW019962--_MTZ26_T':0.01883)907197:0.06353)n19639:0.00993,(((((((((((((((((((((((('X98336-_Pseudoalteromonas_antarctica-_Pseudoalteromonas_antarctica-_-X98336--_CECT_4664_T':0.00488,'AY040230-_Pseudoalteromonas_translucida-_Pseudoalteromonas_translucida-_-AY040230--_KMM520_T':0.00349)n19762:0.00349,'AF529062-_Pseudoalteromonas_fuliginea-_Pseudoalteromonas_fuliginea-_-AF529062--_CIP_105339_T':0.00209)n19761:0.00419,'AY387858-_Pseudoalteromonas_aliena-_Pseudoalteromonas_aliena-_-AY387858--_KMM_3562_T':0.00419)n19760:0.0014,'AY563031-_Pseudoalteromonas_marina-_Pseudoalteromonas_marina-_-AY563031--_mano4_T':0.02304)n19759:0,('X67024-_Pseudoalteromonas_haloplanktis-_Pseudoalteromonas_haloplanktis-_-X67024--_ATCC_14393_T':0.00567,'X82146-_Pseudoalteromonas_nigrifaciens-_Pseudoalteromonas_nigrifaciens-_-X82146--_NCIMB_8614T_T':0)n19763:0.0014)n19758:0.00558,((('DQ787199-_Pseudoalteromonas_arctica-_Pseudoalteromonas_arctica-_-DQ787199--_A_37-1-2_T':0.00348,'AF082562-_Pseudoalteromonas_elyakovii-_Pseudoalteromonas_elyakovii-_-AF082562--_KMM162T_T':0)n19766:0,'AY040229-_Pseudoalteromonas_paragorgicola-_Pseudoalteromonas_paragorgicola-_-AY040229--_KMM3548_T':0.00139)n19765:0,'AF082564-_Pseudoalteromonas_distincta-_Pseudoalteromonas_distincta-_-AF082564--_KMM638T_T':0)77608:0)n19757:0.0014,'AJ417594-_Pseudoalteromonas_agarivorans-_Pseudoalteromonas_agarivorans-_-AJ417594--_KMM_255_T':0.00209)n19756:0.0007,(('AF316144-_Pseudoalteromonas_issachenkonii-_Pseudoalteromonas_issachenkonii-_-AF316144--_KMM_3549-_F13_T':0.00287,'AF214729-_Pseudoalteromonas_tetraodonis-_Pseudoalteromonas_tetraodonis-_-AF214729--_KMM_458_T':0.00419)n19768:0.00558,'AB680359-_Pseudoalteromonas_carrageenovora-_Pseudoalteromonas_carrageenovora-_-AB680359--_NBRC_12985_T':0.00209)n19767:0.0014)n19755:0,'AB681736-_Pseudoalteromonas_espejiana-_Pseudoalteromonas_espejiana-_-AB681736--_NBRC_102222_T':0.00209)n19754:0.0014,'AB681913-_Pseudoalteromonas_atlantica-_Pseudoalteromonas_atlantica-_-AB681913--_NBRC_103033_T':0.0007)n19753:0,(((('AJ507251-_Pseudoalteromonas_mariniglutinosa-_Pseudoalteromonas_mariniglutinosa-_-AJ507251--_KMM_3635_T':0.0146,'U85855-_Pseudoalteromonas_prydzensis-_Pseudoalteromonas_prydzensis-_-U85855--_MB8-11_T':0.00491)n19772:0.00558,'MT271987-_Pseudoalteromonas_ostreae-_Pseudoalteromonas_ostreae-_-MT271987--_hOe-66T':0.00071)n19771:0.0021,('KU588400-_Pseudoalteromonas_rhizosphaerae-_Pseudoalteromonas_rhizosphaerae-_-KU588400--_RA15_T':0.0317,'KU716039-_Pseudoalteromonas_neustonica-_Pseudoalteromonas_neustonica-_-KU716039--_PAMC_28425_T':0.00707)n19773:0.00071)182141:0.01254,'X82140-_Pseudoalteromonas_undina-_Pseudoalteromonas_undina-_-X82140--_NCIMB_2128T_T':0.0156)n19769:0.01898)n19752:0.02231,'CP032090-_Pseudoalteromonas_donghaensis-_Pseudoalteromonas_donghaensis-_-CP032090--_HJ51_n[G]_T':0.00278)n19751:0.01262,'FJ404721-_Pseudoalteromonas_lipolytica-_Pseudoalteromonas_lipolytica-_-FJ404721--_LMEB_39_T':0.00278)n19750:0.01814,'AB576636-_Pseudoalteromonas_arabiensis-_Pseudoalteromonas_arabiensis-_-AB576636--_k53_T':0.00972)n19749:0.0028,('KT377064-_Pseudoalteromonas_gelatinilytica-_Pseudoalteromonas_gelatinilytica-_-KT377064--_NH153_T':0,'KT900238-_Pseudoalteromonas_profundi-_Pseudoalteromonas_profundi-_-KT900238--_TP162_T':0.0069)n19774:0.03749)n19748:0.0021,'AB720724-_Pseudoalteromonas_shioyasakiensis-_Pseudoalteromonas_shioyasakiensis-_-AB720724--_SE3_T':0.00348)n19747:0.00631,'AF316891-_Pseudoalteromonas_ruthenica-_Pseudoalteromonas_ruthenica-_-AF316891--_KMM300_T':0.0328)n19746:0.00705,'KU535632-_Pseudoalteromonas_amylolytica-_Pseudoalteromonas_amylolytica-_-KU535632--_JW1_T':0.01599)n19745:0.0056,(('X82135-_Pseudoalteromonas_aurantia-_Pseudoalteromonas_aurantia-_-X82135--_ATCC_33046T_T':0.00071,'X82137-_Pseudoalteromonas_citrea-_Pseudoalteromonas_citrea-_-X82137--_NCIMB_1889T_T':0.00212)n19776:0.04504,'DQ011289-_Pseudoalteromonas_byunsanensis-_Pseudoalteromonas_byunsanensis-_-DQ011289--_FR1199_T':0.02364)n19775:0.01552)n19744:0.00211,(((((((((('AF144036-_Pseudoalteromonas_maricaloris-_Pseudoalteromonas_maricaloris-_-AF144036--_KMM636-_LMG_19692-_CIP_106859_T':0.0014,'AB681918-_Pseudoalteromonas_piscicida-_Pseudoalteromonas_piscicida-_-AB681918--_NBRC_103038_T':0.0007)n19786:0,'AF297958-_Pseudoalteromonas_flavipulchra-_Pseudoalteromonas_flavipulchra-_-AF297958--_NCIMB2033-_KMM_3630-_LMG_20361_T':0)n19785:0.0014,'MT514367-_Pseudoalteromonas_galatheae-_Pseudoalteromonas_galatheae-_-MT514367--_S4498T':0.00349)n19784:0.0021,'AB681334-_Pseudoalteromonas_peptidolytica-_Pseudoalteromonas_peptidolytica-_-AB681334--_NBRC_101021_T':0.00279)n19783:0.014,'X82147-_Pseudoalteromonas_rubra-_Pseudoalteromonas_rubra-_-X82147--_ATCC_29570T_T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omonas_azerbaijanorientalis-_Pseudomonas_azerbaijanorientalis-_-CP077078--_SWRI123T':0.00209)n20490:0.00279)n20336:0.0007,'AKBQ01000002-_Pseudomonas_agarici-_Pseudomonas_agarici-_-AKBQ01000002--_NCPPB_2289_T':0.01115)n20335:0.0063,(((((('MW377590-_Pseudomonas_baltica-_Pseudomonas_baltica-_-MW377590--_MBT-2_T':0,'AY152673-_Pseudomonas_rhizosphaerae-_Pseudomonas_rhizosphaerae-_-AY152673--_IH5_T':0.0007)n20497:0.0014,'KM888184-_Pseudomonas_coleopterorum-_Pseudomonas_coleopterorum-_-KM888184--_Esc2Am_T':0.00351)n20496:0.00979,'AJ011504-_Pseudomonas_abietaniphila-_Pseudomonas_abietaniphila-_-AJ011504--_ATCC_700689_T':0.00843)n20495:0.0042,('Y11150-_Pseudomonas_graminis-_Pseudomonas_graminis-_-Y11150--_DSM_11363__T':0.00488,'AY364537-_Pseudomonas_lutea-_Pseudomonas_lutea-_-AY364537--_OK2_T':0.00488)n20498:0.0014)n20494:0.0028,'MG190030-_Pseudomonas_bohemica-_Pseudomonas_bohemica-_-MG190030--_IA19_T':0.01118)n20493:0.0028,'MN382268-_Pseudomonas_akapageensis-_Pseudomonas_akapageensis-_-MN382268--_PS24_T':0.00627)n20492:0.0049)n20334:0.00281,('HG738971-_Pseudomonas_lalucatii-_Pseudomonas_lalucatii-_-HG738971--_R1b-54_T':0.00513,'JF749828-_Pseudomonas_kuykendallii-_Pseudomonas_kuykendallii-_-JF749828--_H2_T':0.00836)n20499:0.0084)n20333:0.014,((((((((((((((('CP035952-_Pseudomonas_tructae-_Pseudomonas_tructae-_-CP035952--_SNU_WT1__T':0.00139,'LT009706-_Pseudomonas_wadenswilerensis-_Pseudomonas_wadenswilerensis-_-LT009706--_CCOS_864_T':0)n20514:0.00279,'AJJP01000212-_Pseudomonas_donghuensis-_Pseudomonas_donghuensis-_-AJJP01000212--_HYS_T':0)n20513:0.00697,'MH428812-_Pseudomonas_huaxiensis-_Pseudomonas_huaxiensis-_-MH428812--_WCHPs060044_T':0.00139)n20512:0,'AY970951-_Pseudomonas_vranovensis-_Pseudomonas_vranovensis-_-AY970951--_CCM_7279_T':0.00627)n20511:0,'AY324319-_Pseudomonas_alkylphenolica-_Pseudomonas_alkylphenolica-_-AY324319--_KL28_T':0.00209)n20510:0.00629,((('KY979145-_Pseudomonas_defluvii-_Pseudomonas_defluvii-_-KY979145--_WCHP16_T':0.00349,'KY471137-_Pseudomonas_laurentiana-_Pseudomonas_laurentiana-_-KY471137--_GSL-010_T':0.00141)n20517:0.0014,'OD946146-_Pseudomonas_arcuscaelestis-_Pseudomonas_arcuscaelestis-_-OD946146--_P66_T':0.00558)n20516:0.0014,('MW009702-_Pseudomonas_palmensis-_Pseudomonas_palmensis-_-MW009702--_BBB001T':0.0007,'LC514379-_Pseudomonas_brassicae-_Pseudomonas_brassicae-_-LC514379--_MAFF_212427_T':0.00141)n20518:0.0021)n20515:0.01257)n20509:0.0014,'AB126621-_Pseudomonas_japonica-_Pseudomonas_japonica-_-AB126621--_IAM_15071_T':0.00768)n20508:0.0028,('AB021397-_Pseudomonas_asplenii-_Pseudomonas_asplenii-_-AB021397--_ATCC_23835_T':0.00838,'D84020-_Pseudomonas_putida-_Pseudomonas_putida-_-D84020--_IAM_1236_T':0.00767)n20519:0.0056)n20507:0.01117,((((((((('MT507072-_Pseudomonas_ekonensis-_Pseudomonas_ekonensis-_-MT507072--_COR58T':0.01045,'CP077093-_Pseudomonas_vanderleydeniana-_Pseudomonas_vanderleydeniana-_-CP077093--_RW8P3T':0.00559)n20528:0.007,('CP077077-_Pseudomonas_maumuensis-_Pseudomonas_maumuensis-_-CP077077--_COW77T':0.0007,'HF930598-_Pseudomonas_soli-_Pseudomonas_soli-_-HF930598--_F-279-208T_T':0.0007)n20529:0)n20527:0.00838,'AF072688-_Pseudomonas_mosselii-_Pseudomonas_mosselii-_-AF072688--_CIP_105259_T':0)n20526:0,'JABWRJ000000000-_Pseudomonas_peradeniyensis-_Pseudomonas_peradeniyensis-_-JABWRJ000000000--_BW13M1T':0)n20525:0.00279,'QKVM01000000-_Pseudomonas_sichuanensis-_Pseudomonas_sichuanensis-_-QKVM01000000--_WCHPs060039_T':0.00838)n20524:0,((('AM911646-_Pseudomonas_oryzicola-_Pseudomonas_oryzicola-_-AM911646--_RD9SR1T':0.00149,'AM911640-_Pseudomonas_anuradhapurensis-_Pseudomonas_anuradhapurensis-_-AM911640--_RD8MR3T':0)n20532:0.00145,'HF674459-_Pseudomonas_guariconensis-_Pseudomonas_guariconensis-_-HF674459--_PCAVU11_T':0.00349)n20531:0.00838,'AY907566-_Pseudomonas_entomophila-_Pseudomonas_entomophila-_-AY907566--_L48_T':0.00279)n20530:0.0028)n20523:0,(('CP077076-_Pseudomonas_fakonensis-_Pseudomonas_fakonensis-_-CP077076--_COW40T':0,'CP077075-_Pseudomonas_xanthosomatis-_Pseudomonas_xanthosomatis-_-CP077075--_COR54T':0)n20534:0,'CP077095-_Pseudomonas_xantholysinigenes-_Pseudomonas_xantholysinigenes-_-CP077095--_RW9S1A_/type_materialtype_strain_of__Pseudomonasxantholysinigenes__Girard_et_al._2021T':0)n20533:0.00279)n20522:0,'CP077073-_Pseudomonas_muyukensis-_Pseudomonas_muyukensis-_-CP077073--_COW39T':0)n20521:0.00139,((('OPYN01000000-_Pseudomonas_inefficax-_Pseudomonas_inefficax-_-OPYN01000000--_JV551A3_T':0,'AB009457-_Pseudomonas_plecoglossicida-_Pseudomonas_plecoglossicida-_-AB009457--_FPC951_T':0.0007)n20537:0,'AF064458-_Pseudomonas_monteilii-_Pseudomonas_monteilii-_-AF064458--_CIP_104883_T':0.0007)n20536:0.00139,'MH517510-_Pseudomonas_asiatica-_Pseudomonas_asiatica-_-MH517510--_RYU5_T':0)n20535:0)n20520:0)n20506:0,('LT718462-_Pseudomonas_persica-_Pseudomonas_persica-_-LT718462--_VKh13_T':0.01263,'LT718474-_Pseudomonas_asiatica-_Pseudomonas_asiatica-_-LT718474--_VM14_T':0.00998)n20538:0.0028)n20505:0,'EU103629-_Pseudomonas_taiwanensis-_Pseudomonas_taiwanensis-_-EU103629--_BCRC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ilia_oculi-_Massilia_oculi-_-CP029343--_CCUG_43427_n[G]_T':0.01883)n21670:0.0197,'EU808006-_Massilia_niabensis-_Massilia_niabensis-_-EU808006--_5420S-26_T':0.01646)n21669:0.00353,((('KU870757-_Massilia_terrae-_Massilia_terrae-_-KU870757--_J11_T':0.01329,'KU870758-_Massilia_solisilvae-_Massilia_solisilvae-_-KU870758--_J18_T':0.0049)n21676:0.00211,'KU870756-_Massilia_agilis-_Massilia_agilis-_-KU870756--_J9_T':0.0035)n21675:0.00563,'KT963079-_Massilia_chloroacetimidivorans-_Massilia_chloroacetimidivorans-_-KT963079--_TA-C7e_T':0.00979)n21674:0.01479)n21668:0.00493)n21649:0.00423,'QYUP01000001-_Massilia_cavernae-_Massilia_cavernae-_-QYUP01000001--_K1S02-61T':0.0077)n21648:0.00494,('MN865813-_Massilia_aquatica-_Massilia_aquatica-_-MN865813--_P3165_T':0.0119,'CP028324-_Massilia_armeniaca-_Massilia_armeniaca-_-CP028324--_ZMN-3_wT':0.01119)n21677:0.0134)n21647:0.00212,'JF799985-_Massilia_namucuonensis-_Massilia_namucuonensis-_-JF799985--_333-1-0411_T':0.01471)n21646:0.00354,((((('KJ361504-_Massilia_eurypsychrophila-_Massilia_eurypsychrophila-_-KJ361504--_B528-3_T':0.00708,'KM873051-_Massilia_psychrophila-_Massilia_psychrophila-_-KM873051--_B1555-1_T':0.01415)n21682:0.01557,'MT950109-_Massilia_soli-_Massilia_soli-_-MT950109--_R798_T':0.0084)n21681:0.00212,'MN685328-_Massilia_polaris-_Massilia_polaris-_-MN685328--_RP-1-19T':0.0084)n21680:0.00563,('EF546777-_Massilia_brevitalea-_Massilia_brevitalea-_-EF546777--_byr23-80_T':0.00774,'FJ969486-_Massilia_jejuensis-_Massilia_jejuensis-_-FJ969486--_5317J-18_T':0.00715)n21683:0.02115)n21679:0.00141,((((('MN612047-_Massilia_frigida-_Massilia_frigida-_-MN612047--_P5534_T':0,'MN611986-_Massilia_rubra-_Massilia_rubra-_-MN611986--_P3094_T':0)n21688:0,'MN612043-_Massilia_mucilaginosa-_Massilia_mucilaginosa-_-MN612043--_P5902_T':0)n21687:0.0014,'CP024608-_Massilia_violaceinigra-_Massilia_violaceinigra-_-CP024608--_B2_wT':0.0021)n21686:0.0014,'KJ755877-_Massilia_glaciei-_Massilia_glaciei-_-KJ755877--_B448-2_T':0.01667)n21685:0.00281,'MH551481-_Massilia_atriviolacea-_Massilia_atriviolacea-_-MH551481--_SOD_T':0.01472)n21684:0.00634)n21678:0.01268)n21645:0.01623,((((((((('AY966001-_Massilia_lutea-_Massilia_lutea-_-AY966001--_101_T':0.0014,'AY965998-_Massilia_dura-_Massilia_dura-_-AY965998--_16_T':0.01399)n21697:0.00633,'AY965999-_Massilia_albidiflava-_Massilia_albidiflava-_-AY965999--_45_T':0.0028)n21696:0,('HM777013-_Massilia_flava-_Massilia_flava-_-HM777013--_Y9_T':0.01778,'HM053474-_Massilia_umbonata-_Massilia_umbonata-_-HM053474--_LP01_T':0.00853)n21698:0.00494)n21695:0.01124,(('KU321297-_Pseudoduganella_eburnea-_Pseudoduganella_eburnea-_-KU321297--_10R_5-21_T':0.0035,'MK968434-_Massilia_guangdongensis-_Massilia_guangdongensis-_-MK968434--_DS3_T':0.0084)n21700:0,'AY376163-_Pseudoduganella_violaceinigra-_Pseudoduganella_violaceinigra-_-AY376163--_YIM_31327_T':0.00913)n21699:0.00493)n21694:0.01268,'MN865823-_Duganella_rivi-_Duganella_rivi-_-MN865823--_FT55W_T':0.00979)n21693:0.00563,('MN865822-_Duganella_fentianensis-_Duganella_fentianensis-_-MN865822--_FT93W_T':0.0014,'MN865821-_Duganella_qianjiadongensis-_Duganella_qianjiadongensis-_-MN865821--_CY13W_T':0.0014)n21701:0.00561)n21692:0.0014,((('MT378212-_Massilia_horti-_Massilia_horti-_-MT378212--_ONC3_T':0.0184,'X65590-_Telluria_chitinolytica-_Telluria_chitinolytica-_-X65590--_ACM_3522_LTP_[T]_T':0.04071)n21704:0.01493,'KT003718-_Massilia_violacea-_Massilia_violacea-_-KT003718--_CAVio_T':0.01286)n21703:0.01338,'KX427103-_Pseudoduganella_danionis-_Pseudoduganella_danionis-_-KX427103--_E3/2_T':0.0098)n21702:0.00563)n21691:0.00632,((('AY966000-_Massilia_plicata-_Massilia_plicata-_-AY966000--_76_T':0.00909,'KX944690-_Massilia_buxea-_Massilia_buxea-_-KX944690--_A9_T':0.0049)n21707:0.00776,'HQ839786-_Massilia_lurida-_Massilia_lurida-_-HQ839786--_D5_T':0.01678)n21706:0.01551,('MK968133-_Duganella_albus-_Duganella_albus-_-MK968133--_FT9W_T':0.01189,'MK968135-_Duganella_aquatilis-_Duganella_aquatilis-_-MK968135--_FT26W_T':0.00979)n21708:0.00846)n21705:0.00141)n21690:0.00211,'EU672807-_Duganella_radicis-_Duganella_radicis-_-EU672807--_Sac-41_T':0.01786)n21689:0.00353)n21644:0,((((('FR852575-_Duganella_phyllosphaerae-_Duganella_phyllosphaerae-_-FR852575--_T54_LTP_[T]_T':0.00663,'AB681807-_Duganella_zoogloeoides-_Duganella_zoogloeoides-_-AB681807--_NBRC_102465_T':0.0021)n21713:0.0246,'MN865815-_Duganella_pernnla-_Duganella_pernnla-_-MN865815--_FT109W_T':0.01331)n21712:0.00707,((('HM038005-_Rugamonas_rubra-_Rugamonas_rubra-_-HM038005--_MOM_28/2/79_T':0.00991,'MT984570-_Rugamonas_violacea-_Rugamonas_violacea-_-MT984570--_P5900T':0.00707)n21716:0.01054,'MK968139-_Rugamonas_aquatica-_Rugamonas_aquatica-_-MK968139--_FT29W_T':0.00561)n21715:0.00141,'MN548382-_Rugamonas_rivuli-_Rugamonas_rivuli-_-MN548382--_FT103W_T':0.0014)212744:0.00562)n21711:0.01335,'MN865814-_Duganella_levis-_Duganella_levis-_-MN865814--_CY42W_T':0.00769)n21710:0.00211,((((('MN548381-_Massilia_rivuli-_Massilia_rivuli-_-MN548381--_FT92W_T':0.00699,'KJ186108-_Massilia_ginsengisoli-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acterium_luofuense-_-MW940784--_LFS511WT':0.00209,'HE648174-_Undibacterium_squillarum-_Undibacterium_squillarum-_-HE648174--_CMJ-15_T':0.00489)n21798:0.02541)n21776:0.01774,('U49757-_Oxalobacter_formigenes-_Oxalobacter_formigenes-_-U49757--_OXB_T':0.0421,'FR733700-_Oxalobacter_vibrioformis-_Oxalobacter_vibrioformis-_-FR733700--_DSM5502_T':0.04109)846:0.00498)n21775:0.00569)75682+401469:0.02856,'LT605587-_Parvibium_lacunae-_Parvibium_lacunae-_-LT605587--_KMB9__T':0.05941)n21630:0.00647,((((((((((((((((('HF586507-_Achromobacter_aegrifaciens-_Achromobacter_aegrifaciens-_-HF586507--_LMG_26852_T':0.0021,'HE613447-_Achromobacter_marplatensis-_Achromobacter_marplatensis-_-HE613447--_R-46660_T':0.0056)n21816:0.0014,'HF586506-_Achromobacter_insuavis-_Achromobacter_insuavis-_-HF586506--_LMG_26845_T':0)n21815:0.0028,'AY170847-_Achromobacter_insolitus-_Achromobacter_insolitus-_-AY170847--_LMG_6003_T':0.0021)n21814:0.0028,'Y14908-_Achromobacter_xylosoxidans-_Achromobacter_xylosoxidans-_-Y14908--_DSM_10346_T':0.0014)n21813:0.0028,'HE798552-_Achromobacter_pulmonis-_Achromobacter_pulmonis-_-HE798552--_R-16442_T':0.0021)n21812:0.0014,((((('HG324053-_Achromobacter_deleyi-_Achromobacter_deleyi-_-HG324053--_LMG_3458_T':0,'HG324052-_Achromobacter_kerstersii-_Achromobacter_kerstersii-_-HG324052--_LMG_3441_T':0)n21821:0,('AB010841-_Achromobacter_piechaudii-_Achromobacter_piechaudii-_-AB010841--_EY3860_=_ATCC43552_T':0.00381,'AY170848-_Achromobacter_spanius-_Achromobacter_spanius-_-AY170848--_LMG_5911_T':0)n21822:0)n21820:0.0028,'HG324051-_Achromobacter_pestifer-_Achromobacter_pestifer-_-HG324051--_LMG_3431_T':0.0049)n21819:0.0021,'HE613446-_Achromobacter_mucicolens-_Achromobacter_mucicolens-_-HE613446--_R-46658_T':0.0035)n21818:0.0007,'HE613448-_Achromobacter_animicus-_Achromobacter_animicus-_-HE613448--_R-46662_T':0.0021)n21817:0.0042)n21811:0.0014,((('HG324050-_Achromobacter_agilis-_Achromobacter_agilis-_-HG324050--_LMG_3411_T':0.0014,'AJ278451-_Achromobacter_denitrificans-_Achromobacter_denitrificans-_-AJ278451--_DSM_30026_-T-_T':0.0014)n21825:0,('HF586508-_Achromobacter_anxifer-_Achromobacter_anxifer-_-HF586508--_LMG_26857_T':0,'HF586509-_Achromobacter_dolens-_Achromobacter_dolens-_-HF586509--_LMG_26840_T':0)n21826:0.0014)n21824:0,'AB010840-_Achromobacter_ruhlandii-_Achromobacter_ruhlandii-_-AB010840--_EY3918_=_ATCC15749_T':0.00765)n21823:0.0028)n21810:0,'LT976503-_Achromobacter_veterisilvae-_Achromobacter_veterisilvae-_-LT976503--_LMG_30378_T':0.0007)n21809:0.01541,'LC094463-_Achromobacter_aloeverae-_Achromobacter_aloeverae-_-LC094463--_AVA-1_T':0.00714)222:0.00211,((((((('U04820-_Bordetella_holmesii-_Bordetella_holmesii-_-U04820--_CDC_F5101_T':0.0042,'HE965805-_Bordetella_pertussis-_Bordetella_pertussis-_-HE965805--_18323_T':0)n21833:0.0042,'LRII01000001-_Bordetella_parapertussis-_Bordetella_parapertussis-_-LRII01000001--_NCTC_5952_T':0)n21832:0,'U04948-_Bordetella_bronchiseptica-_Bordetella_bronchiseptica-_-U04948--_ATCC_19395_T':0)n21831:0.00561,(((('LC053647-_Bordetella_muralis-_Bordetella_muralis-_-LC053647--_T6220-3-2b_T':0.0014,'LC053656-_Bordetella_tumbae-_Bordetella_tumbae-_-LC053656--_T6713-1-3b_T':0.0014)n21837:0.01192,'LC053650-_Bordetella_tumulicola-_Bordetella_tumulicola-_-LC053650--_T6517-1-4b_T':0.0042)n21836:0.00772,'AM902716-_Bordetella_petrii-_Bordetella_petrii-_-AM902716--_DSM_12804_T':0.00561)n21835:0.0007,'KT258895-_Saccharedens_versatilis-_Saccharedens_versatilis-_-KT258895--_CAG32_T':0.02452)n21834:0.00634)n21830:0.00281,((('AF177667-_Bordetella_hinzii-_Bordetella_hinzii-_-AF177667--_LMG_13501T_T':0.0007,'JHEP02000033-_Bordetella_pseudohinzii-_Bordetella_pseudohinzii-_-JHEP02000033--_8-296-03_T':0.0007)n21840:0.0028,'AJ277798-_Bordetella_trematum-_Bordetella_trematum-_-AJ277798--_DSM_11334_-T-_T':0.00911)n21839:0.00211,'AF177666-_Bordetella_avium-_Bordetella_avium-_-AF177666--_ATCC_35086_T':0.0049)n21838:0.00281)n21829:0.00561,('CP016170-_Bordetella_bronchialis-_Bordetella_bronchialis-_-CP016170--_AU3182_n[G]_T':0.0007,'KF601914-_Bordetella_sputigena-_Bordetella_sputigena-_-KF601914--_R-39474_T':0.00073)n21841:0.01128)n21828:0,'EU082162-_Bordetella_flabilis-_Bordetella_flabilis-_-EU082162--_AU10664_T':0.00218)n21827:0.00491)n21807:0.01124,(((('LT719155-_Pigmentiphaga_aceris-_Pigmentiphaga_aceris-_-LT719155--_SAP-32_T':0.02042,'MH667611-_Pigmentiphaga_humi-_Pigmentiphaga_humi-_-MH667611--_IMT-318_T':0.01819)n21845:0.00705,('EF100696-_Pigmentiphaga_daeguensis-_Pigmentiphaga_daeguensis-_-EF100696--_K110_T':0.0021,'AF282916-_Pigmentiphaga_kullae-_Pigmentiphaga_kullae-_-AF282916--_K24_T':0.0028)n21846:0.00141)n21844:0.00282,('EU583723-_Pigmentiphaga_litoralis-_Pigmentiphaga_litoralis-_-EU583723--_JSM_061001_T':0.01541,'JF806521-_Pigmentiphaga_soli-_Pigmentiphaga_soli-_-JF806521--_BS12_T':0.00909)n21847:0.00635)152267:0.01409,((('KC986352-_Verticiella_sediminum-_Verticiella_sediminum-_-KC986352--_XH089_T':0.02098,'KX262858-_Orrella_dioscoreae-_Orrella_dioscoreae-_-KX262858--_LMG_29303T_T':0.00979)n21850:0.0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iformis-_Nitrosospira_multiformis-_-CP000103--_ATCC_25196_T':0.00839)n22350:0.00843,'KC477402-_Nitrosospira_lacus-_Nitrosospira_lacus-_-KC477402--_APG3_T':0.00557)35798:0.01985)206379:0.02707,(('AB720115-_Ferriphaselus_amnicola-_Ferriphaselus_amnicola-_-AB720115--_OYT1_T':0.05502,'LC065124-_Ferrigenium_kumadai-_Ferrigenium_kumadai-_-LC065124--_An22_T':0.03892)n22352:0.02494,'LC656623-_Sideroxyarcus_emersonii-_Sideroxyarcus_emersonii-_-LC656623--_MIZ01_T':0.03614)90627:0.01923)n22338:0.00357)n22306:0.00573,('GU585672-_Spirillum_volutans-_Spirillum_volutans-_-GU585672--_ATCC_19554_LTP_[T]_T':0.01364,'AY845251-_Spirillum_winogradskyi-_Spirillum_winogradskyi-_-AY845251--_D-427_T':0.0105)119068+967:0.11509)n22305:0.01143)n21356:0.0078,(((('AP012547-_Sulfuritalea_hydrogenivorans-_Sulfuritalea_hydrogenivorans-_-AP012547--_DSM22779_n[G]_T':0.02815,'CP010554-_Rugosibacter_aromaticivorans-_Rugosibacter_aromaticivorans-_-CP010554--_Ca6_T':0.03806)n22357:0.02335,('EF219370-_Georgfuchsia_toluolica-_Georgfuchsia_toluolica-_-EF219370--_G5G6_T':0.02716,'AB842427-_Sulfurisoma_sediminicola-_Sulfurisoma_sediminicola-_-AB842427--_BSN1_T':0.02366)n22358:0.00425)n22356:0.00212,((('AZUP01000001-_Methyloversatilis_discipulorum-_Methyloversatilis_discipulorum-_-AZUP01000001--_FAM1_T':0.0028,'KC782839-_Methyloversatilis_thermotolerans-_Methyloversatilis_thermotolerans-_-KC782839--_3t_T':0.01229)n22361:0.00777,'AFHG01000027-_Methyloversatilis_universalis-_Methyloversatilis_universalis-_-AFHG01000027--_FAM5_T':0.00489)378210:0.06824,'AJ306683-_Sterolibacterium_denitrificans-_Sterolibacterium_denitrificans-_-AJ306683--_Chol-1S_T':0.03668)n22359:0.00142)n22355:0.0092,'AY879297-_Denitratisoma_oestradiolicum-_Denitratisoma_oestradiolicum-_-AY879297--_AcBE2-1_T':0.03132)2008793:0.02054)32003:0.01203,((((((('AJ318917-_Dechloromonas_denitrificans-_Dechloromonas_denitrificans-_-AJ318917--_ED1_T':0.00976,'AY277621-_Dechloromonas_hortensis-_Dechloromonas_hortensis-_-AY277621--_MA-1_T':0.0007)n22368:0.00841,('Y17060-_Ferribacterium_limneticum-_Ferribacterium_limneticum-_-Y17060--_cda-1_T':0.01183,'AY007722-_Quatrionicoccus_australiensis-_Quatrionicoccus_australiensis-_-AY007722--_Ben_117-_NCIMB_13738-_CIP_107055_T':0.02307)n22369:0.01409)n22367:0.01754,'AF047462-_Dechloromonas_agitata-_Dechloromonas_agitata-_-AF047462--_CKB_T':0.01185)73029:0.01058,(('AB166882-_Azonexus_caeni-_Azonexus_caeni-_-AB166882--_Slu-05_T':0.01882,'EF158390-_Azonexus_hydrophilus-_Azonexus_hydrophilus-_-EF158390--_d8-1_T':0.03203)n22371:0.00354,'AF011350-_Azonexus_fungiphilus-_Azonexus_fungiphilus-_-AF011350--_BS5-8_T':0.01815)146936:0.01128)2008795:0.0113,('AF011346-_Azovibrio_restrictus-_Azovibrio_restrictus-_-AF011346--_S5b2_T':0.03911,'LC094505-_Fluviibacter_phosphoraccumulans-_Fluviibacter_phosphoraccumulans-_-LC094505--_SHINM1_T':0.03732)n22372:0.01709)n22364:0.00566,((('Y17601-_Propionivibrio_dicarboxylicus-_Propionivibrio_dicarboxylicus-_-Y17601--_DSM_5885_T':0.0271,'AF016690-_Propionivibrio_pelophilus-_Propionivibrio_pelophilus-_-AF016690--_asp_66_T':0.02224)n22375:0.01132,'AJ307983-_Propionivibrio_limicola-_Propionivibrio_limicola-_-AJ307983--_GolChi1_T_T':0.0153)83766:0.0155,(('M34132-_Rhodocyclus_purpureus-_Rhodocyclus_purpureus-_-M34132--_6770_T':0.03027,'D16208-_Rhodocyclus_tenuis-_Rhodocyclus_tenuis-_-D16208--_DSM109_T':0.02718)1064:0.00637,'KR296798-_Oryzomicrobium_terrae-_Oryzomicrobium_terrae-_-KR296798--_TPP412_T':0.04508)n22376:0.00708)n22373:0.00988)n22363:0.00566,(('AF011347-_Azospira_oryzae-_Azospira_oryzae-_-AF011347--_6a3_T':0.01122,'MW228450-_Azospira_inquinata-_Azospira_inquinata-_-MW228450--_Azo-3T':0.02571)n22379:0.00848,'DQ974114-_Azospira_restricta-_Azospira_restricta-_-DQ974114--_SUA2_T':0.03482)146937:0.01131)n22362:0.02681)n21354:0.00851,(((((('AJ011506-_Zoogloea_resiniphila-_Zoogloea_resiniphila-_-AJ011506--_DhA-35=ATCC_700687_T':0.01183,'MN685327-_Zoogloea_dura-_Zoogloea_dura-_-MN685327--_G-4-1-14_T':0.00278)n22385:0.00842,'DQ413148-_Zoogloea_caeni-_Zoogloea_caeni-_-DQ413148--_EMB43_T':0.01253)n22384:0.01331,'AB201043-_Zoogloea_oryzae-_Zoogloea_oryzae-_-AB201043--_A-7_T':0.01044)n22383:0.00493,'X74913-_Zoogloea_ramigera-_Zoogloea_ramigera-_-X74913--_ATCC_19544_-T-_T':0.01809)n22382:0.01129,'KF667502-_Zoogloea_oleivorans-_Zoogloea_oleivorans-_-KF667502--_Buc_T':0.02922)349:0.01845,((('DQ665916-_Uliginosibacterium_gangwonense-_Uliginosibacterium_gangwonense-_-DQ665916--_5YN10-9_T':0.02596,'LN812814-_Uliginosibacterium_paludis-_Uliginosibacterium_paludis-_-LN812814--_KBP-13_T':0.02177)n22388:0.00646,'KY649438-_Uliginosibacterium_sediminicola-_Uliginosibacterium_sediminicola-_-KY649438--_M1-21_T':0.03795)392735:0.02427,('JQ922418-_Niveibacterium_umoris-_Niveibacterium_umoris-_-JQ922418--_MIC2059_T':0.01292,'MT584870-_Niveibacterium_microcysteis-_Niveibacterium_microcysteis-_-MT584870--_HC41_T':0.01292)1769726:0.02728)n22386:0.02485)n22380:0.00639)n21353:0.01209,((((((((('AJ315677-_Thauera_aminoaromatica-_Thauera_aminoaromatica-_-AJ315677--_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acheonensis-_-EF575564--_BD-c54_T':0.01108)n22503:0.00907)n22501:0.00489,((('AY686710-_Pseudoxanthomonas_kalamensis-_Pseudoxanthomonas_kalamensis-_-AY686710--_JA40_T':0.02296,'AB905612-_Pseudoxanthomonas_helianthi-_Pseudoxanthomonas_helianthi-_-AB905612--_roo10_T':0.01316)n22507:0.00629,'MH795530-_Pseudoxanthomonas_winnipegensis-_Pseudoxanthomonas_winnipegensis-_-MH795530--_NML130738_T':0.01247)n22506:0.00489,'AM418384-_Pseudoxanthomonas_spadix-_Pseudoxanthomonas_spadix-_-AM418384--_IMMIB_AFH-5_T':0.01796)n22505:0.00559)n22500:0.00698,(((((('X99299-_Xanthomonas_translucens-_Xanthomonas_translucens-_-X99299--_LMG_876_T':0,'JAFIWC000000000-_Xanthomonas_youngii-_Xanthomonas_youngii-_-JAFIWC000000000--_AmX2_T':0.00208)n22513:0.00277,'Y10756-_Xanthomonas_melonis-_Xanthomonas_melonis-_-Y10756--_LMG_8670_T_T':0.00069)n22512:0,'Y10754-_Xanthomonas_hyacinthi-_Xanthomonas_hyacinthi-_-Y10754--_LMG_739_T_T':0.00139)n22511:0.00278,'X95918-_Xanthomonas_albilineans-_Xanthomonas_albilineans-_-X95918--_LMG_494-T_T':0.00208)n22510:0.01875,'Y10766-_Xanthomonas_sacchari-_Xanthomonas_sacchari-_-Y10766--_LMG_471_T_T':0.00903)n22509:0,'OM424206-_Xanthomonas_bonasiae-_Xanthomonas_bonasiae-_-OM424206--_FX4_T':0.00707)n22508:0.00558)n22499:0.00488)338+29446+339:0.00418,(((((((('AY650027-_Pseudoxanthomonas_kaohsiungensis-_Pseudoxanthomonas_kaohsiungensis-_-AY650027--_J36_T':0.01396,'AB681401-_Pseudoxanthomonas_daejeonensis-_Pseudoxanthomonas_daejeonensis-_-AB681401--_NBRC_101159_T':0.00416)n22521:0,'AY550263-_Pseudoxanthomonas_koreensis-_Pseudoxanthomonas_koreensis-_-AY550263--_T7-09_T':0)n22520:0.0111,'AY927994-_Pseudoxanthomonas_suwonensis-_Pseudoxanthomonas_suwonensis-_-AY927994--_4M1_T':0.00416)n22519:0.00348,'AB681329-_Pseudoxanthomonas_broegbernensis-_Pseudoxanthomonas_broegbernensis-_-AB681329--_NBRC_101013_T':0.00554)n22518:0.00139,('KJ607172-_Pseudoxanthomonas_sangjuensis-_Pseudoxanthomonas_sangjuensis-_-KJ607172--_5GH38-5_T':0.02147,'AF427039-_Pseudoxanthomonas_taiwanensis-_Pseudoxanthomonas_taiwanensis-_-AF427039--_CB-226_T':0.03597)n22522:0.00983)n22517:0.01047,'EF424397-_Pseudoxanthomonas_indica-_Pseudoxanthomonas_indica-_-EF424397--_P15_T':0.02198)n22516:0.0021,(('AB681337-_Pseudoxanthomonas_japonensis-_Pseudoxanthomonas_japonensis-_-AB681337--_NBRC_101033_T':0.00278,'JX173988-_Pseudoxanthomonas_arseniciresistens-_Pseudoxanthomonas_arseniciresistens-_-JX173988--_KAs5-3_T':0.00762)n22524:0.00278,'AF273082-_Pseudoxanthomonas_mexicana-_Pseudoxanthomonas_mexicana-_-AF273082--_AMX_26B_T':0)n22523:0.00695)n22515:0.00557,'GU908487-_Pseudoxanthomonas_putridarboris-_Pseudoxanthomonas_putridarboris-_-GU908487--_WD12_T':0.00693)n22514:0.02297)83618:0.0042,(('AF192343-_Xylella_fastidiosa_subsp._fastidiosa-_Xylella_fastidiosa_subsp._fastidiosa-_-AF192343--_PCE-FF-_ATCC35879_T':0.01532,('JDSQ01000040-_Xylella_taiwanensis-_Xylella_taiwanensis-_-JDSQ01000040--_PLS229_T':0.00139,'AF203388-_Xylella_fastidiosa_subsp._multiplex-_Xylella_fastidiosa_subsp._multiplex-_-AF203388--_PL.788-_ATCC_35871_T':0.00208)n22527:0.00489)2370+2371:0.04533,'AB021391-_Pseudomonas_boreopolis-_Pseudomonas_boreopolis-_-AB021391--_ATCC_33662_T':0.00903)n22525:0.01191)n22449:0.01398,'KP899165-_Lysobacter_silvestris-_Lysobacter_silvestris-_-KP899165--_AM20-91_T':0.02251)n22448:0.00351,((((((((((((('AJ012228-_Luteimonas_mephitis-_Luteimonas_mephitis-_-AJ012228--_B1953/27.1_T':0.00903,'KP684142-_Luteimonas_soli-_Luteimonas_soli-_-KP684142--_Y2_T':0.00346)n22540:0.00279,'GU199001-_Luteimonas_lutimaris-_Luteimonas_lutimaris-_-GU199001--_G3_T':0.01593)n22539:0.01612,'KP076295-_Luteimonas_notoginsengisoli-_Luteimonas_notoginsengisoli-_-KP076295--_SYP-B804_T':0.01039)n22538:0.03074,'MK848406-_Luteimonas_gilva-_Luteimonas_gilva-_-MK848406--_H23_T':0.01731)n22537:0.00351,'HQ874629-_Luteimonas_cucumeris-_Luteimonas_cucumeris-_-HQ874629--_Y4_T':0.01849)n22536:0.00633,'KF746926-_Arenimonas_maotaiensis-_Arenimonas_maotaiensis-_-KF746926--_YT8_T':0.04155)n22535:0.00915,'EF626688-_Luteimonas_aquatica-_Luteimonas_aquatica-_-EF626688--_RIB1-20_T':0.01177)n22534:0.0105,('DQ846687-_Luteimonas_composti-_Luteimonas_composti-_-DQ846687--_CC-YY255_T':0.01247,'EU295459-_Luteimonas_marina-_Luteimonas_marina-_-EU295459--_FR1330_T':0.00984)n22541:0.01821)n22533:0.01884,((((('KJ769177-_Luteimonas_terrae-_Luteimonas_terrae-_-KJ769177--_THG-MD21_T':0.0125,'MT879293-_Luteimonas_deserti-_Luteimonas_deserti-_-MT879293--_SJ-16T':0.00554)n22546:0,'MT879465-_Luteimonas_salinisoli-_Luteimonas_salinisoli-_-MT879465--_SJ-92_T':0.01108)n22545:0.00836,'MF185395-_Luteimonas_chenhongjianii-_Luteimonas_chenhongjianii-_-MF185395--_100111_T':0.01177)n22544:0.00279,('KM888877-_Lysobacter_tolerans-_Lysobacter_tolerans-_-KM888877--_UM1_T':0.01835,'MF924393-_Luteimonas_rhizosphaerae-_Luteimonas_rhizosphaerae-_-MF924393--_SF4-12_T':0.01177)n22547:0.00839)n22543:0,'LM994044-_Lysobacter_pythonis-_Lysobacter_pythonis-_-LM994044--_4284_T':0.02722)n22542:0.0042)n22532:0.0028,((('LN879436-_Luteimonas_padinae-_Luteimonas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ipiger_marinus-_-EU928765--_CK-I3-6_T':0,'KC534242-_Salipiger_manganoxidans-_Salipiger_manganoxidans-_-KC534242--_VSW210_T':0.00221)n23017:0.00592,'FJ230833-_Salipiger_aestuarii-_Salipiger_aestuarii-_-FJ230833--_AD8_T':0.02792)n23016:0.01117,'AY639887-_Salipiger_thiooxidans-_Salipiger_thiooxidans-_-AY639887--_CHLG_1_T':0.02365)n23015:0.00372,'KU315483-_Salipiger_pallidus-_Salipiger_pallidus-_-KU315483--_DCSW07_T':0.02866)n23014:0.00522,'JQ807220-_Litorisediminicola_beolgyonensis-_Litorisediminicola_beolgyonensis-_-JQ807220--_BB-MW24_T':0.02723)n23013:0.00521,('AJ877265-_Salipiger_pacificus-_Salipiger_pacificus-_-AJ877265--_DX5-10_T':0.00893,'MW186827-_Salipiger_mangrovisoli-_Salipiger_mangrovisoli-_-MW186827--_6D45A_T':0.00678)n23018:0.01556)n23012:0.01043,('AUIJ01000020-_Sediminimonas_qiaohouensis-_Sediminimonas_qiaohouensis-_-AUIJ01000020--_DSM_21189_T':0.04874,'FJ265707-_Salinihabitans_flavidus-_Salinihabitans_flavidus-_-FJ265707--_ISL-46_T':0.02491)n23019:0.01344)n23011:0.00743)263377:0.00519)n22964:0.00296)481178:0.0037,(((((((((((((((('KF307638-_Roseivivax_marinus-_Roseivivax_marinus-_-KF307638--_ZL136_T':0.01776,('HQ615878-_Roseivivax_sediminis-_Roseivivax_sediminis-_-HQ615878--_YIM_D21_T':0.01333,'KM058064-_Roseivivax_jejudonensis-_Roseivivax_jejudonensis-_-KM058064--_CDM-17_T':0.01037)n23036:0.03795)n23035:0.00149,'JALZ01000099-_Roseivivax_halodurans-_Roseivivax_halodurans-_-JALZ01000099--_JCM_10272_T':0.01395)n23034:0.00371,'JAME01000086-_Roseivivax_isoporae-_Roseivivax_isoporae-_-JAME01000086--_LMG_25204_T':0.01396)n23033:0.01336,('KC018453-_Allosediminivita_pacifica-_Allosediminivita_pacifica-_-KC018453--_22DY03_T':0.01838,'FJ897782-_Tranquillimonas_rosea-_Tranquillimonas_rosea-_-FJ897782--_BH87090_T':0.03938)n23037:0.01119)n23032:0.0015,('KX815123-_Rhodosalinus_sediminis-_Rhodosalinus_sediminis-_-KX815123--_WDN1C137_T':0.02203,'KY344792-_Rhodosalinus_halophilus-_Rhodosalinus_halophilus-_-KY344792--_E84_T':0.02421)2047740:0.03941)n23031:0.00599,'AY962295-_Citreimonas_salinaria-_Citreimonas_salinaria-_-AY962295--_CL-SP20_T':0.03093)n23030:0.01491,('FOXV01000030-_Roseivivax_halotolerans-_Roseivivax_halotolerans-_-FOXV01000030--_JCM_10271_w[G]_T':0.02131,'FJ875966-_Roseivivax_lentus-_Roseivivax_lentus-_-FJ875966--_S5-5_T':0.02057)n23039:0.0015)93682:0.01412,'MF113251-_Aestuariicoccus_marinus-_Aestuariicoccus_marinus-_-MF113251--_NAP41_T':0.01765)n23028:0.01041,(((('AAMO01000005-_Pseudooceanicola_batsensis-_Pseudooceanicola_batsensis-_-AAMO01000005--_HTCC2597_T':0.02281,('KJ159065-_Pseudooceanicola_atlanticus-_Pseudooceanicola_atlanticus-_-KJ159065--_22II-S11g_T':0.01687,'MK685209-_Pseudooceanicola_onchidii-_Pseudooceanicola_onchidii-_-MK685209--_XY-99_T':0.02203)n23044:0.00965)n23043:0.0037,'JHZF01000008-_Pseudooceanicola_nanhaiensis-_Pseudooceanicola_nanhaiensis-_-JHZF01000008--_DSM_18065_T':0.0265)n23042:0.00592,(('EU581832-_Pseudooceanicola_nitratireducens-_Pseudooceanicola_nitratireducens-_-EU581832--_JLT1210_T':0.01029,'KF434118-_Pseudooceanicola_flagellatus-_Pseudooceanicola_flagellatus-_-KF434118--_DY470_T':0.01841)n23046:0.01928,'MN719637-_Pseudooceanicola_pacificus-_Pseudooceanicola_pacificus-_-MN719637--_216_PA32_1_T':0.01321)n23045:0.00444)n23041:0.00816,'MN929131-_Pseudooceanicola_aestuarii-_Pseudooceanicola_aestuarii-_-MN929131--_E2-1_T':0.01102)n23040:0.0215)n23027:0.00595,('KU671052-_Marimonas_arenosa-_Marimonas_arenosa-_-KU671052--_CAU_1311_T':0.02201,'MG905434-_Marimonas_lutisalis-_Marimonas_lutisalis-_-MG905434--_GH1-19_T':0.00955)1914026:0.02526)n23026:0.00744,((((('AAYA01000001-_Sagittula_stellata-_Sagittula_stellata-_-AAYA01000001--_E-37_T':0.02232,'MW785249-_Sagittula_salina-_Sagittula_salina-_-MW785249--_M10.9X_T':0.01258)n23052:0.00971,'KT180227-_Maliponia_aquimaris-_Maliponia_aquimaris-_-KT180227--_MM-10_T':0.01111)n23051:0.00373,'EU734592-_Mameliella_alba-_Mameliella_alba-_-EU734592--_JLT354-W_T':0.01335)n23050:0.00299,((('Y11552-_Antarctobacter_heliothermus-_Antarctobacter_heliothermus-_-Y11552--_EL-219_T':0.01705,'HQ336489-_Sagittula_marina-_Sagittula_marina-_-HQ336489--_F028-2_T':0.03405)n23055:0.02481,'KF986570-_Antarctobacter_jejuensis-_Antarctobacter_jejuensis-_-KF986570--_13-2-B6_T':0.01856)74032:0.0045,'MZ277401-_Mameliella_sediminis-_Mameliella_sediminis-_-MZ277401--_DP3N28-2_T':0.01074)n23053:0.00972)1434019+58842:0.03428,('EF211829-_Ponticoccus_litoralis-_Ponticoccus_litoralis-_-EF211829--_CL-GR66_T':0.01422,'KP726358-_Pseudoponticoccus_marisrubri-_Pseudoponticoccus_marisrubri-_-KP726358--_SJ5A-1_T':0.02208)n23056:0.00746)n23048:0.0134)n23025:0.00593,'AB289592-_Marinovum_algicola-_Marinovum_algicola-_-AB289592--_NBRC_16653_T':0.01981)n23024:0.00224,'MW931740-_Mesobacterium_pallidum-_Mesobacterium_pallidum-_-MW931740--_T40-1_T':0.03004)n23023:0.01555,((((((('MF527111-_Roseovarius_ramblicola-_Roseovarius_ramblicola-_-MF527111--_D15_T':0.02196,'MF144427-_Roseovarius_nitratireducens-_Roseovarius_nitratireducens-_-MF144427--_TFZ_T':0.00512)n23063:0.0148,'MF086675-_Ro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ovibrio_legallii-_-FJ225426--_H1_T':0.02769,'MN537481-_Desulfovibrio_porci-_Desulfovibrio_porci-_-MN537481--_DSM_105247_T':0.0201)n25578:0.0035)n25575:0.00707,'AF192152-_Desulfovibrio_piger-_Desulfovibrio_piger-_-AF192152--_ATCC29098_T':0.02839)n25574:0.04235,('AF418179-_Nitratidesulfovibrio_vulgaris-_Nitratidesulfovibrio_vulgaris-_-AF418179--_DSM_644_T':0.03651,((('DQ122124-_Cupidesulfovibrio_oxamicus_-_Cupidesulfovibrio_oxamicus_-_-DQ122124--_DSM_1925_T':0.00208,'X87409-_Cupidesulfovibrio_termitidis-_Cupidesulfovibrio_termitidis-_-X87409--_HI1_T':0.00419)n25582:0.00069,'MK260014-_Cupidesulfovibrio_liaohensis-_Cupidesulfovibrio_liaohensis-_-MK260014--_XJ01_T':0.00139)2802295:0.0035,'Z24450-_Desulfovibrio_longreachensis-_Desulfovibrio_longreachensis-_-Z24450--_Desulfovibrio_longreachii_T':0.01189)n25580:0.03168)n25579:0.02058)n25573:0.00644,('AJ867049-_Bilophila_wadsworthia-_Bilophila_wadsworthia-_-AJ867049--_7959_T':0.04783,'L15739-_Lawsonia_intracellularis-_Lawsonia_intracellularis-_-L15739--_1482/89_T':0.07487)n25583:0.02159)n25572:0.01213,('X99501-_Desulfovibrio_cuneatus-_Desulfovibrio_cuneatus-_-X99501--_STL1_T':0.06523,'X99504-_Desulfovibrio_litoralis-_Desulfovibrio_litoralis-_-X99504--_STL6_T':0.06193)n25584:0.06495)n25571:0.01507,((((('FJ655907-_Halodesulfovibrio_oceani_subsp._oceani-_Halodesulfovibrio_oceani_subsp._oceani-_-FJ655907--_I.8.1_T':0.00072,'FJ655908-_Halodesulfovibrio_oceani_subsp._galateae-_Halodesulfovibrio_oceani_subsp._galateae-_-FJ655908--_I.9.1_T':0.00072)983975:0.01419,'FJ655909-_Halodesulfovibrio_aestuarii-_Halodesulfovibrio_aestuarii-_-FJ655909--_NCIMB_9335_T':0.00349)n25588:0.00426,('AB353727-_Halodesulfovibrio_marinisediminis-_Halodesulfovibrio_marinisediminis-_-AB353727--_C/L2-=_JCM_14577-_T':0.00279,'LN614381-_Halodesulfovibrio_spirochaetisodalis-_Halodesulfovibrio_spirochaetisodalis-_-LN614381--_JC271_T':0.00557)n25590:0.00709)1912771:0.07073,('AM418397-_Desulfovibrio_psychrotolerans-_Desulfovibrio_psychrotolerans-_-AM418397--_PWC_=_JS1_T':0.01812,'LC531930-_Desulfovibrio_subterraneus-_Desulfovibrio_subterraneus-_-LC531930--_HN2__T':0.02791)n25591:0.02077)n25586:0.02811,('Y11984-_Oleidesulfovibrio_alaskensis-_Oleidesulfovibrio_alaskensis-_-Y11984--_Al1_=_NCIMB_13491_T':0.00418,'X93994-_Oleidesulfovibrio_vietnamensis-_Oleidesulfovibrio_vietnamensis-_-X93994--_G3_100_T':0.00836)2909705:0.05743)n25585:0.03084)n25570:0.00928,(('AY726757-_Desulfovibrio_paquesii-_Desulfovibrio_paquesii-_-AY726757--_DSM_1382-_ATCC_19364_T':0.01478,'DQ447183-_Megalodesulfovibrio_paquesii-_Megalodesulfovibrio_paquesii-_-DQ447183--_SB1_T':0.01802)2910978:0.05435,((('Y09504-_Oceanidesulfovibrio_indonesiensis-_Oceanidesulfovibrio_indonesiensis-_-Y09504--_Ind_1_LTP_[T]_T':0.00485,'DQ365924-_Oceanidesulfovibrio_marinus-_Oceanidesulfovibrio_marinus-_-DQ365924--_E-2_T':0.00832)n25597:0.00774,'U31080-_Oceanidesulfovibrio_gabonensis-_Oceanidesulfovibrio_gabonensis-_-U31080--_SEBR_2840_T':0.01205)2905722:0.0444,('FR749898-_Desulfovibrio_giganteus-_Desulfovibrio_giganteus-_-FR749898--_DSM_4123_T':0.01385,'LM999902-_Desulfovibrio_biadhensis-_Desulfovibrio_biadhensis-_-LM999902--_BD4_T':0.02566)n25598:0.04244)n25595:0.01645)n25593:0.01566)n25569:0.01354,(((((((('AF458778-_Maridesulfovibrio_hydrothermalis-_Maridesulfovibrio_hydrothermalis-_-AF458778--_AM13_T':0.025,'Y18049-_Desulfovibrio_zosterae-_Desulfovibrio_zosterae-_-Y18049--_lac_LTP_[T]_T':0.02485)n25606:0.01472,(('DQ148944-_Maridesulfovibrio_ferrireducens-_Maridesulfovibrio_ferrireducens-_-DQ148944--_61_T':0.01448,'DQ148943-_Maridesulfovibrio_frigidus-_Maridesulfovibrio_frigidus-_-DQ148943--_18_T':0.02)n25608:0.007,'KJ739728-_Desulfovibrio_gilichinskyi-_Desulfovibrio_gilichinskyi-_-KJ739728--_K3S_T':0.02748)n25607:0.01187)n25605:0.0028,'KT767983-_Maridesulfovibrio_salinus-_Maridesulfovibrio_salinus-_-KT767983--_P1BSR_T':0.02625)n25604:0.00772,'CP001649-_Maridesulfovibrio_salexigens-_Maridesulfovibrio_salexigens-_-CP001649--_DSM_2638_T':0.01809)n25603:0.02889,'AY359868-_Maridesulfovibrio_bastinii-_Maridesulfovibrio_bastinii-_-AY359868--_SRL4225_T':0.05114)2794998:0.01557,(((('FO203427-_Pseudodesulfovibrio_piezophilus-_Pseudodesulfovibrio_piezophilus-_-FO203427--_C1TLV30_T':0.02719,'FR733706-_Pseudodesulfovibrio_profundus-_Pseudodesulfovibrio_profundus-_-FR733706--_DSM11384_T':0.03345)n25612:0.02385,('CP002431-_Pseudodesulfovibrio_aespoeensis-_Pseudodesulfovibrio_aespoeensis-_-CP002431--_Aspo-2_T':0.02572,'MN601397-_Pseudodesulfovibrio_alkaliphilus-_Pseudodesulfovibrio_alkaliphilus-_-MN601397--_F-1T':0.01521)n25613:0.01615)n25611:0.00352,(((('AF230530-_Desulfovibrio_dechloracetivorans-_Desulfovibrio_dechloracetivorans-_-AF230530--_SF3_LTP_[T]_T':0.0111,'EU137840-_Pseudodesulfovibrio_hydrargyri-_Pseudodesulfovibrio_hydrargyri-_-EU137840--_BerOc1_T':0.00357)n25617:0.00278,'CP003220-_Pseudodesulfovibrio_mercurii-_Pseudodesulfovibrio_mercurii-_-CP003220--_ND132_T':0.00829)n25616:0.00764,'KT750867-_Pseudodesulfovibrio_indicus-_Pseudodesulfovibrio_indicus-_-KT750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obacteriovorax_marinus-_-FQ312005--_SJ_T':0.05685,'AF084859-_Halobacteriovorax_litoralis-_Halobacteriovorax_litoralis-_-AF084859--_JS5_T':0.05675)n25782:0.00936,('AJ288899-_Bacteriovorax_stolpii-_Bacteriovorax_stolpii-_-AJ288899--_DSM_12778_T':0.0625,'AF084852-_Peredibacter_starrii-_Peredibacter_starrii-_-AF084852--_A3.12_T':0.11793)263369:0.03043)n25781:0.01603,'MH150810-_Halobacteriovorax_vibrionivorans-_Halobacteriovorax_vibrionivorans-_-MH150810--_BL9_T':0.07469)3031419+2024979+1652132+1652133:0.09731)3018035:0.02677)n25674:0.00788,(((((((((((((('MZ148489-_Geomonas_nitrogeniifigens-_Geomonas_nitrogeniifigens-_-MZ148489--_RF4_T':0.00217,'LC549121-_Geomonas_paludis-_Geomonas_paludis-_-LC549121--_Red736_T':0.0007)n25797:0.00626,'MZ148503-_Geomonas_oryzisoli-_Geomonas_oryzisoli-_-MZ148503--_RG10_T':0.00499)n25796:0.0007,'MW386411-_Geomonas_anaerohicana-_Geomonas_anaerohicana-_-MW386411--_Red421T':0.00351)n25795:0.00768,((('MZ377295-_Geomonas_azotofigens-_Geomonas_azotofigens-_-MZ377295--_Red51T':0.00141,'MW386410-_Geomonas_propionica-_Geomonas_propionica-_-MW386410--_Red259T':0.00484)n25800:0.00207,'MZ377297-_Geomonas_diazotrophica-_Geomonas_diazotrophica-_-MZ377297--_Red69T':0.0007)n25799:0,'MZ148482-_Geomonas_subterranea-_Geomonas_subterranea-_-MZ148482--_RG2_T':0.00214)n25798:0.00902)n25794:0.01662,'MH915553-_Geomonas_oryzae-_Geomonas_oryzae-_-MH915553--_S43_T':0.00352)n25793:0.00416,'MH915556-_Geomonas_terrae-_Geomonas_terrae-_-MH915556--_Red111_T':0.00844)n25792:0,'MH915554-_Geomonas_edaphica-_Geomonas_edaphica-_-MH915554--_Red53_T':0.00141)n25791:0,'MH915555-_Geomonas_ferrireducens-_Geomonas_ferrireducens-_-MH915555--_S62_T':0)n25790:0.01805,((('LC505061-_Geomonas_silvestris-_Geomonas_silvestris-_-LC505061--_Red330_T':0.00985,'LC505064-_Geomonas_limicola-_Geomonas_limicola-_-LC505064--_Red745_T':0.0091)n25803:0.02374,'U96917-_Geomonas_bremense-_Geomonas_bremense-_-U96917--_Dfr1_T':0.00278)n25802:0.00556,'CP001124-_Geomonas_bemidjiensis-_Geomonas_bemidjiensis-_-CP001124--_Bem_T':0.00069)2883512:0.02152)2651583:0.01468,'MW386414-_Geomesophilobacter_sediminis-_Geomesophilobacter_sediminis-_-MW386414--_Red875T':0.02382)n25788:0.01471,(('EU660516-_Geotalea_daltonii-_Geotalea_daltonii-_-EU660516--_FRC-32_T':0.00072,'EU711072-_Geotalea_toluenoxydans-_Geotalea_toluenoxydans-_-EU711072--_TMJ1_T':0.0014)n25805:0.01118,'CP000698-_Geotalea_uraniireducens-_Geotalea_uraniireducens-_-CP000698--_Rf4_T':0.01801)2910589:0.01609)n25787:0.01261,(((('CP000482-_Pelobacter_propionicus-_Pelobacter_propionicus-_-CP000482--_DSM_2379_T':0.02071,('U41561-_Pelotalea_chapellei-_Pelotalea_chapellei-_-U41561--_172_T':0.01172,'AY653549-_Geobacter_psychrophilus-_Geobacter_psychrophilus-_-AY653549--_P35_T':0.01604)n25810:0.00279)n25809:0.00488,(('CP001089-_Trichlorobacter_lovleyi-_Trichlorobacter_lovleyi-_-CP001089--_SZ_T':0.01248,'AF223382-_Geobacter_thiogenes-_Geobacter_thiogenes-_-AF223382--_ATCC_BAA-34_LTP_[T]_T':0.00825)115782:0.03609,(('MK334373-_Oryzomonas_japonica-_Oryzomonas_japonica-_-MK334373--_Red96_T':0,'MK334374-_Oryzomonas_sagensis-_Oryzomonas_sagensis-_-MK334374--_Red100_T':0)n25814:0.00279,'MK334372-_Oryzomonas_rubra-_Oryzomonas_rubra-_-MK334372--_Red88_T':0.0007)2855184:0.01543)n25811:0.0028)n25808:0.01602,'U96918-_Geoanaerobacter_pelophilus-_Geoanaerobacter_pelophilus-_-U96918--_Dfr2_T':0.03534)n25807:0,'AB682759-_Geomobilimonas_luticola-_Geomobilimonas_luticola-_-AB682759--_OSK6_T':0.02478)n25806:0.0056)n25786:0.01265,((('U13928-_Geobacter_sulfurreducens_subsp._sulfurreducens-_Geobacter_sulfurreducens_subsp._sulfurreducens-_-U13928--_PCA_T':0.00284,'AB762695-_Geobacter_sulfurreducens_subsp._ethanolicus-_Geobacter_sulfurreducens_subsp._ethanolicus-_-AB762695--_OSK2A_T':0.00481)35554:0.00833,('KJ620987-_Geobacter_soli-_Geobacter_soli-_-KJ620987--_GSS01_T':0.00206,'KF006333-_Geobacter_anodireducens-_Geobacter_anodireducens-_-KF006333--_SD-1_T':0.00069)n25818:0.01805)n25816:0.03622,((((('AF335183-_Geobacter_grbiciae-_Geobacter_grbiciae-_-AF335183--_TACP-5_T':0.00275,'CP000148-_Geobacter_metallireducens-_Geobacter_metallireducens-_-CP000148--_GS-15_T':0.00138)n25823:0.00138,'MZ714560-_Geobacter_benzoatilyticus-_Geobacter_benzoatilyticus-_-MZ714560--_Jerry-YX_T':0.01786)n25822:0.00278,'U28173-_Geobacter_hydrogenophilus-_Geobacter_hydrogenophilus-_-U28173--_H2_T':0.00431)n25821:0.02917,'DQ145535-_Geobacter_pickeringii-_Geobacter_pickeringii-_-DQ145535--_G13_T':0.0303)n25820:0.00773,'DQ145534-_Geobacter_argillaceus-_Geobacter_argillaceus-_-DQ145534--_G12_T':0.04508)n25819:0)n25815:0.00565)3031668+213422+28231:0.03182,(((((((('U49748-_Desulfuromonas_chloroethenica-_Desulfuromonas_chloroethenica-_-U49748--_TT4B_T':0.02353,'AF357915-_Desulfuromonas_michiganensis-_Desulfuromonas_michiganensis-_-AF357915--_BB1_T':0.01581)n25831:0.00836,'U23140-_Desulfuromonas_acetexigens-_Desulfuromonas_acetexigens-_-U23140--_DSM_1397_LTP_[T]_T':0.01746)n25830:0.00836,'KJ776405-_Desulfuromonas_carbonis-_Desulfuromonas_carbonis-_-KJ776405--_ICBM_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ogeniformans-_Proteinivorax_hydrogeniformans-_-KU933341--_Z-710_T':0.01125,'JQ904541-_Proteinivorax_tanatarense-_Proteinivorax_tanatarense-_-JQ904541--_Z-910_T':0.02041)1491776:0.06717)n29203:0.0066,'KR349724-_Alkalicella_caledoniensis-_Alkalicella_caledoniensis-_-KR349724--_LB2_T':0.04731)1491775:0.05973)n28901:0.00659)216572+1263+35829:0.01237)32066+203490+186826+203491+186804+186806+203492+31979+33958+1485+1578+167639+1730+44259:0.01732,(((((((('AHLV01000002-_Desulfosporosinus_youngiae-_Desulfosporosinus_youngiae-_-AHLV01000002--_DSM_17734_T':0.0391,((('JF810424-_Desulfosporosinus_burensis-_Desulfosporosinus_burensis-_-JF810424--_BSREI1_T':0.04931,'KX822013-_Desulfosporosinus_nitroreducens-_Desulfosporosinus_nitroreducens-_-KX822013--_59.4B_T':0.02201)n29218:0.00896,('AJ582757-_Desulfosporosinus_lacus-_Desulfosporosinus_lacus-_-AJ582757--_STP12_T':0.01025,'KX822015-_Desulfosporosinus_fructosivorans-_Desulfosporosinus_fructosivorans-_-KX822015--_63.6F_T':0.02467)n29219:0.00207)n29217:0.00412,(('FNCP01000068-_Desulfosporosinus_hippei-_Desulfosporosinus_hippei-_-FNCP01000068--_DSM_8344_w[G]_T':0.0082,'AF076527-_Desulfosporosinus_meridiei-_Desulfosporosinus_meridiei-_-AF076527--_S10_LTP_[T]_T':0.01441)n29221:0.00276,'AJ493051-_Desulfosporosinus_auripigmenti-_Desulfosporosinus_auripigmenti-_-AJ493051--_DSMZ_13351_T':0.0123)n29220:0.0069)n29216:0.00415)n29215:0.00069,((('FJ951625-_Desulfosporosinus_acidiphilus-_Desulfosporosinus_acidiphilus-_-FJ951625--_SJ4_T':0.02049,'HG316990-_Desulfosporosinus_acididurans-_Desulfosporosinus_acididurans-_-HG316990--_M1_T':0.0255)n29224:0.0118,'MT359230-_Desulfosporosinus_metallidurans-_Desulfosporosinus_metallidurans-_-MT359230--_OL_T':0.02224)n29223:0.00138,'Y11570-_Desulfosporosinus_orientis-_Desulfosporosinus_orientis-_-Y11570--_DSM_765_T':0.02058)n29222:0.00208)79206:0.01946,(((('CP001336-_Desulfitobacterium_hafniense-_Desulfitobacterium_hafniense-_-CP001336--_DCB-2_T':0.04519,'U68528-_Desulfitobacterium_chlororespirans-_Desulfitobacterium_chlororespirans-_-U68528--_Co23_T':0.01508)n29228:0.00693,'L28946-_Desulfitobacterium_dehalogenans-_Desulfitobacterium_dehalogenans-_-L28946--_JW/IU-DC1_T':0.02008)n29227:0.01114,'CP007032-_Desulfitobacterium_metallireducens-_Desulfitobacterium_metallireducens-_-CP007032--_853-15A_T':0.04144)36853:0.00767,('EU711071-_Paradesulfitobacterium_aromaticivorans-_Paradesulfitobacterium_aromaticivorans-_-EU711071--_UKTL_T':0.03561,'MZ090564-_Paradesulfitobacterium_ferrireducens-_Paradesulfitobacterium_ferrireducens-_-MZ090564--_PLL0_T':0.03827)2881027:0.00774)n29225:0.0084)n29213:0.01625,('CP002547-_Syntrophobotulus_glycolicus-_Syntrophobotulus_glycolicus-_-CP002547--_DSM_8271_T':0.06813,'CP007033-_Dehalobacter_restrictus-_Dehalobacter_restrictus-_-CP007033--_PER-K23-_DSM_9455_n[G]_T':0.03336)n29230:0.02753)2937909:0.06042,((((('CP000930-_Heliomicrobium_modesticaldum-_Heliomicrobium_modesticaldum-_-CP000930--_Ice1-_ATCC_51547_T':0.02266,'AB100837-_Heliomicrobium_gestii-_Heliomicrobium_gestii-_-AB100837--_DSM_11169_T':0.0169)n29235:0.00356,('AF249678-_Heliomicrobium_sulfidophilum-_Heliomicrobium_sulfidophilum-_-AF249678--_BR4_-T-_T':0.02113,'AF249679-_Heliomicrobium_undosum-_Heliomicrobium_undosum-_-AF249679--_BG29_-T-_T':0.01341)n29236:0.00214)2831443:0.00714,('M11212-_Heliobacterium_chlorum-_Heliobacterium_chlorum-_-M11212--_DSM_3682_LTP_[T]_T':0.02249,'AB100835-_Heliobacillus_mobilis-_Heliobacillus_mobilis-_-AB100835--_DSM_6151_T':0.02118)2697:0.02432)n29233:0.00651,'L36197-_Heliophilum_fasciatum-_Heliophilum_fasciatum-_-L36197--_Tanzania_T':0.08741)n29232:0.02043,((('DQ266255-_Heliorestis_convoluta-_Heliorestis_convoluta-_-DQ266255--_HH__T':0.01801,'AF079102-_Heliorestis_daurensis-_Heliorestis_daurensis-_-AF079102--_BT-H1_T':0.01333)n29240:0.01271,'AB100838-_Heliorestis_baculata-_Heliorestis_baculata-_-AB100838--_DSM_13446_T':0.02178)n29239:0.00573,'EU908049-_Heliorestis_acidaminivorans-_Heliorestis_acidaminivorans-_-EU908049--_HR10B_T':0.01193)79598:0.05578)31984:0.04637)n29211:0.0304,((((('HQ322118-_Natranaerobaculum_magadiense-_Natranaerobaculum_magadiense-_-HQ322118--_Z-1001_T':0.03771,'EU338489-_Natronovirga_wadinatrunensis-_Natronovirga_wadinatrunensis-_-EU338489--_JW/NM-WN-LH1_T':0.0289)n29245:0.00428,('DQ417202-_Natranaerobius_thermophilus-_Natranaerobius_thermophilus-_-DQ417202--_JW/NM-WN-LF_T':0.04097,'EU338490-_Natranaerobius_trueperi-_Natranaerobius_trueperi-_-EU338490--_JW/NM-WN-LU_T':0.0473)375928:0.00794)485255:0.01883,'CP054394-_Natranaerofaba_carboxydovora-_Natranaerofaba_carboxydovora-_-CP054394--_ANCO1_/type_materialtype_strain_of_NatranaerofabacarboxydovoraT':0.0849)485256:0.06548,'EF422412-_Dethiobacter_alkaliphilus-_Dethiobacter_alkaliphilus-_-EF422412--_AHT_1_T':0.09761)n29242:0.04228,(('AB644260-_Peptococcus_niger-_Peptococcus_niger-_-AB644260--_JCM_6506_T':0.02875,'KP322014-_Peptococcus_simiae-_Peptococcus_simiae-_-KP322014--_M108_T':0.02875)2740:0.10371,'Y18214-_Desulfonispora_thiosulfatigenes-_Desulfonispora_thios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icola-_-AM162407--_MPL7_T':0.07852)n29570:0.0449)n29547:0.04002)112+126:0.00738,(((((((('LR593888-_Ramlibacter_aquaticus-_Ramlibacter_aquaticus-_-LR593888--_LMG_30558_T':0.02615,'X56305-_Gemmata_obscuriglobus-_Gemmata_obscuriglobus-_-X56305--_UQM_2246_T':0.00728)113+114:0.04722,'CP053452-_Frigoriglobus_tundricola-_Frigoriglobus_tundricola-_-CP053452--_PL17_T':0.03771)n29578:0.02913,'MK559972-_Urbifossiella_limnaea-_Urbifossiella_limnaea-_-MK559972--_ETA_A1_T':0.07681)n29577:0.00902,'JACEFB010000001-_Thermogemmata_fonticola-_Thermogemmata_fonticola-_-JACEFB010000001--_2918_T':0.0584)n29576:0.01412,'KX369544-_Fimbriiglobus_ruber-_Fimbriiglobus_ruber-_-KX369544--_SP5_T':0.07105)n29575:0.00374,'MN209796-_Limnoglobus_roseus-_Limnoglobus_roseus-_-MN209796--_PX52_T':0.09156)n29574:0.01928,(('AM162406-_Zavarzinella_formosa-_Zavarzinella_formosa-_-AM162406--_A10_T':0.11441,'JN880417-_Telmatocola_sphagniphila-_Telmatocola_sphagniphila-_-JN880417--_SP2_T':0.08988)n29581:0.01037,'FJ811525-_Tuwongella_immobilis-_Tuwongella_immobilis-_-FJ811525--_MBLW1_T':0.119)n29580:0.06188)2691355+1914233:0.08505,((((('AM850678-_Singulisphaera_acidiphila-_Singulisphaera_acidiphila-_-AM850678--_ATCC_BAA-1392=MOB10_T':0.04749,'FN391026-_Singulisphaera_rosea-_Singulisphaera_rosea-_-FN391026--_S26_T':0.0252)466152:0.00871,'KX943553-_Tundrisphaera_lichenicola-_Tundrisphaera_lichenicola-_-KX943553--_P12_T':0.05802)n29585:0.02313,('DQ986200-_Aquisphaera_giovannonii-_Aquisphaera_giovannonii-_-DQ986200--_OJF2_T':0.03901,'KF467528-_Paludisphaera_borealis-_Paludisphaera_borealis-_-KF467528--_PX4_T':0.04167)n29587:0.01017)n29584:0.01092,'CP002353-_Isosphaera_pallida-_Isosphaera_pallida-_-CP002353--_ATCC_43644_T':0.08454)n29583:0.00222,('MK559970-_Tautonia_plasticadhaerens-_Tautonia_plasticadhaerens-_-MK559970--_ElP_T':0.03112,'MG653594-_Tautonia_sociabilis-_Tautonia_sociabilis-_-MG653594--_GM2012_T':0.02542)2680020:0.06717)2691356+1763524:0.09601)n29572:0.01103)203683:0.02657,(((('KU672518-_Sedimentisphaera_salicampi-_Sedimentisphaera_salicampi-_-KU672518--_ST-PulAB-D4_T':0.00645,'KC665947-_Sedimentisphaera_cyanobacteriorum-_Sedimentisphaera_cyanobacteriorum-_-KC665947--_L21-RPul-D3_T':0.00921)2483368:0.12864,'KX151396-_Limihaloglobus_sulfuriphilus-_Limihaloglobus_sulfuriphilus-_-KX151396--_SM-Chi-D1_T':0.07446)2483367:0.03882,'KY471010-_Anaerohalosphaera_lusitana-_Anaerohalosphaera_lusitana-_-KY471010--_ST-NAGAB-D1_T':0.07623)2483366:0.04179,((('AB845176-_Algisphaera_agarilytica-_Algisphaera_agarilytica-_-AB845176--_06SJR6-2_T':0.06686,'MK559978-_Poriferisphaera_corsica-_Poriferisphaera_corsica-_-MK559978--_KS4_T':0.10028)n29595:0.02582,'AP012338-_Phycisphaera_mikurensis-_Phycisphaera_mikurensis-_-AP012338--_NBRC_102666_T':0.09435)666506+666507:0.03618,'KM036168-_Tepidisphaera_mucosa-_Tepidisphaera_mucosa-_-KM036168--_2842_T':0.14939)n29593:0.03874)666505:0.04137)203682:0.06569)n29404:0.01231,('JF304644-_Chitinispirillum_alkaliphilum-_Chitinispirillum_alkaliphilum-_-JF304644--_ACht6-1_T':0.11813,'JF304641-_Chitinivibrio_alkaliphilus-_Chitinivibrio_alkaliphilus-_-JF304641--_ACht1_T':0.14435)n29596:0.08448)n29403:0.00798,((((((((((((((((((((('HQ687089-_Granulicella_arctica-_Granulicella_arctica-_-HQ687089--_MP5ACTX2_T':0.01929,'HQ687090-_Granulicella_sapmiensis-_Granulicella_sapmiensis-_-HQ687090--_S6CTX5A_T':0.01073)n29617:0.01294,'AM887757-_Granulicella_pectinivorans-_Granulicella_pectinivorans-_-AM887757--_TPB6011_T':0.01073)n29616:0.0036,'HQ687088-_Granulicella_tundricola-_Granulicella_tundricola-_-HQ687088--_MP5ACTX9_T':0.01931)n29615:0.00434,'AM887759-_Granulicella_rosea-_Granulicella_rosea-_-AM887759--_T4_T':0.02232)n29614:0.00505,'MK053657-_Granulicella_sibirica-_Granulicella_sibirica-_-MK053657--_AF10_T':0.01788)n29613:0.01447,('MG385062-_Edaphobacter_lichenicola-_Edaphobacter_lichenicola-_-MG385062--_SBC68_T':0.02217,'AM887756-_Granulicella_aggregans-_Granulicella_aggregans-_-AM887756--_TPB6028_T':0.01503)n29618:0.00363)n29612:0.01946,((('AB548308-_Granulicella_cerasi-_Granulicella_cerasi-_-AB548308--_Sakura1_T':0.02359,'AM887758-_Granulicella_paludicola-_Granulicella_paludicola-_-AM887758--_OB1010_T':0.01016)n29621:0.02603,'KF017281-_Granulicella_acidiphila-_Granulicella_acidiphila-_-KF017281--_MCF40_T':0.01073)n29620:0.00723,'HQ687087-_Granulicella_mallensis-_Granulicella_mallensis-_-HQ687087--_MP5ACTX8_T':0.01359)n29619:0.01156)940557:0.01232,'KM083126-_Edaphobacter_dinghuensis-_Edaphobacter_dinghuensis-_-KM083126--_DHF9_T':0.01574)n29610:0.0065,((('DQ528761-_Edaphobacter_aggregans-_Edaphobacter_aggregans-_-DQ528761--_Wbg-1_T':0.00859,'KY457230-_Edaphobacter_acidisoli-_Edaphobacter_acidisoli-_-KY457230--_4G-K17_T':0.02217)n29624:0.00723,('DQ528760-_Edaphobacter_modestus-_Edaphobacter_modestus-_-DQ528760--_Jbg-1_T':0.00572,'KY434002-_Edaphobacter_flagellatus-_Edaphobacter_flagellatus-_-KY434002--_HZ411_T':0.01643)n29625:0.00289)n29623:0.01585,'MF150299-_Edaphobacter_bradus-_Edaphobacter_bradus-_-MF150299--_4MSH08_T':0.01288)n29622:0.00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iphilum-_Thermodesulfobium_acidiphilum-_-CP020921--_3127-1_n[G]_T':0.01483,'AB077817-_Thermodesulfobium_narugense-_Thermodesulfobium_narugense-_-AB077817--_Na82_T':0.00378)227387+227388:0.15326)n29703:0.02076)n29695:0.02614)n29597:0.0029)n29402:0.02086)n25945:0.00947)n18768:0.01154,((((((((((((((((((((((((((((((((((((((((((((('AJ536037-_Mycobacterium_avium_subsp._avium-_Mycobacterium_avium_subsp._avium-_-AJ536037--_DSM_44156_T':0,'X52934-_Mycobacterium_avium_subsp._paratuberculosis-_Mycobacterium_avium_subsp._paratuberculosis-_-X52934--_ATCC_19698._T':0)n29750:0,'EF521891-_Mycobacterium_avium_subsp._silvaticum-_Mycobacterium_avium_subsp._silvaticum-_-EF521891--_ATCC_49884_T':0)1764:0.00699,'EU834055-_Mycobacterium_vulneris-_Mycobacterium_vulneris-_-EU834055--_NLA000700772_T':0.0014)n29748:0.0014,'AM062764-_Mycobacterium_colombiense-_Mycobacterium_colombiense-_-AM062764--_10B_T':0)n29747:0,'LC645084-_Mycobacterium_senriense-_Mycobacterium_senriense-_-LC645084--_TY59_T':0.0021)n29746:0.0021,'EF054881-_Mycobacterium_arosiense-_Mycobacterium_arosiense-_-EF054881--_T1921_T':0.0028)n29745:0.0014,'JX976611-_Mycobacterium_timonense-_Mycobacterium_timonense-_-JX976611--_CIP_109830_T':0.0007)n29744:0.0028,(('JF271818-_Mycobacterium_intracellulare_subsp._intracellulare-_Mycobacterium_intracellulare_subsp._intracellulare-_-JF271818--_ATCC_13950_T':0,'AJ536036-_Mycobacterium_intracellulare-_Mycobacterium_intracellulare-_-AJ536036--_DSM_43223_T':0)n29752:0.0014,'AJ548480-_Mycobacterium_intracellulare_subsp._chimaera-_Mycobacterium_intracellulare_subsp._chimaera-_-AJ548480--_FI-0169_T':0)1767:0.0028)n29743:0,'EU266632-_Mycobacterium_marseillense-_Mycobacterium_marseillense-_-EU266632--_5356591_T':0)n29742:0.0084,((('AF480604-_Mycobacterium_scrofulaceum-_Mycobacterium_scrofulaceum-_-AF480604--_ATCC_19981_T':0.0014,'GQ153270-_Mycobacterium_paraffinicum-_Mycobacterium_paraffinicum-_-GQ153270--_ATCC_12670_T':0.0014)n29755:0,'FJ042897-_Mycobacterium_mantenii-_Mycobacterium_mantenii-_-FJ042897--_NLA000401474_T':0.007)n29754:0.01052,('DQ536404-_Mycobacterium_paraseoulense-_Mycobacterium_paraseoulense-_-DQ536404--_31118_T':0,'DQ536403-_Mycobacterium_seoulense-_Mycobacterium_seoulense-_-DQ536403--_03-19_T':0)n29756:0.0014)n29753:0.0021)n29741:0.0014,((((((((((('AF456240-_Mycobacterium_marinum-_Mycobacterium_marinum-_-AF456240--_ATCC_927_T':0.0021,'LR216719-_Mycobacterium_basiliense-_Mycobacterium_basiliense-_-LR216719--_DSM_104308_T':0.0084)n29767:0,'AB548713-_Mycobacterium_pseudoshottsii-_Mycobacterium_pseudoshottsii-_-AB548713--_JCM_15466_T':0.0035)n29766:0,'AB548725-_Mycobacterium_ulcerans-_Mycobacterium_ulcerans-_-AB548725--_ATCC_19423_T':0.0014)n29765:0.0042,'AY005147-_Mycobacterium_shottsii-_Mycobacterium_shottsii-_-AY005147--_M175_T':0.0028)n29764:0.0042,('X58890-_Mycobacterium_tuberculosis-_Mycobacterium_tuberculosis-_-X58890--_NCTC_7416_H37Rv_T':0.00281,'KF683289-_Mycobacterium_decipiens-_Mycobacterium_decipiens-_-KF683289--_1200985_T':0.00349)n29768:0.0035)n29763:0,'AB268503-_Mycobacterium_shinjukuense-_Mycobacterium_shinjukuense-_-AB268503--_GTC_2738_T':0.01468)n29762:0.0014,'AF406783-_Mycobacterium_lacus-_Mycobacterium_lacus-_-AF406783--_NRCM_00-255_T':0.00839)n29761:0.00421,'X55587-_Mycobacterium_leprae-_Mycobacterium_leprae-_-X55587--_Leprosy_Tissue_Bank-_Research_Institute_Borstel-_FRG_T':0.04186)n29760:0.0014,('HE862232-_Mycobacterium_haemophilum-_Mycobacterium_haemophilum-_-HE862232--_DSM_44634_T':0.00349,'GQ153278-_Mycobacterium_malmoense-_Mycobacterium_malmoense-_-GQ153278--_ATCC_29571_T':0.0028)n29769:0)n29759:0.0028,'AY368456-_Mycobacterium_nebraskense-_Mycobacterium_nebraskense-_-AY368456--_UNMC-MY1349_T':0.0091)n29758:0,'U84502-_Mycobacterium_bohemicum-_Mycobacterium_bohemicum-_-U84502--_DSM_44277_LTP_[T]_T':0.00489)n29757:0.0049)n29740:0.0021,'EU274642-_Mycobacterium_riyadhense-_Mycobacterium_riyadhense-_-EU274642--_NLA000201958_T':0.0028)n29739:0.0014,(((((('LS999933-_Mycobacterium_innocens-_Mycobacterium_innocens-_-LS999933--_MK13_T':0.0014,('AF480602-_Mycobacterium_gastri-_Mycobacterium_gastri-_-AF480602--_ATCC_15754_T':0,'AJ536035-_Mycobacterium_kansasii-_Mycobacterium_kansasii-_-AJ536035--_DSM_44162_T':0)n29776:0)n29775:0.007,'KX987140-_Mycobacterium_persicum-_Mycobacterium_persicum-_-KX987140--_AFPC-000227_T':0.0007)n29774:0,'LS999932-_Mycobacterium_pseudokansasii-_Mycobacterium_pseudokansasii-_-LS999932--_MK142CCUG_72128DSM_107152_T':0)n29773:0.0014,'LS999934-_Mycobacterium_attenuatum-_Mycobacterium_attenuatum-_-LS999934--_MK41__CCUG_72127__DSM_107153_T':0)n29772:0.00421,'HF674384-_Mycobacterium_bourgelatii-_Mycobacterium_bourgelatii-_-HF674384--_02-5273-A84_LTP_[T]_T':0.00935)n29771:0.00561,('AM884328-_Mycobacterium_angelicum-_Mycobacterium_angelicum-_-AM884328--_DSM_45057_T':0,'KC951278-_Mycobacterium_szulgai-_Mycobacterium_szulgai-_-KC951278--_ATCC_35799_T':0)n29777:0.0028)n29770:0)n29738:0,((((('CP025546-_Mycobacterium_paragordonae-_Mycobacterium_paragordonae-_-CP025546--_49061_n[G]_T':0.0007,'KT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polyspora_gregorii-_-X76962--_NCIB_12823-_A85_T':0.00861)n30505:0.01978)n30480:0.00567,'AM420293-_Saccharopolyspora_erythraea-_Saccharopolyspora_erythraea-_-AM420293--_NRRL_2338_T':0.01869)n30479:0.00711,'AM992060-_Saccharopolyspora_rosea-_Saccharopolyspora_rosea-_-AM992060--_IMMIB_L-1070_T':0.02602)n30478:0.00997,(((((((((('JX411621-_Saccharopolyspora_indica-_Saccharopolyspora_indica-_-JX411621--_VRC122_T':0.00985,'LC212942-_Saccharopolyspora_maritima-_Saccharopolyspora_maritima-_-LC212942--_3SS5_12_T':0.01195)n30515:0.00141,'EU267029-_Saccharopolyspora_kobensis-_Saccharopolyspora_kobensis-_-EU267029--_JCM_9109_T':0.00646)n30514:0.00635,'EF693956-_Saccharopolyspora_antimicrobica-_Saccharopolyspora_antimicrobica-_-EF693956--_I05-00074_T':0.00493)n30513:0.00424,('FN179275-_Saccharopolyspora_hordei-_Saccharopolyspora_hordei-_-FN179275--_DSM_44065_T':0.03793,'U93341-_Saccharopolyspora_hirsuta-_Saccharopolyspora_hirsuta-_-U93341--_ATCC_27875_T':0.01261)n30516:0.01416)n30512:0.01203,('EF104116-_Saccharopolyspora_shandongensis-_Saccharopolyspora_shandongensis-_-EF104116--_88_T':0.00356,'MG770776-_Saccharopolyspora_elongata-_Saccharopolyspora_elongata-_-MG770776--_7K502_T':0.00633)n30517:0.00919)n30511:0.00142,('JN989298-_Saccharopolyspora_hattusasensis-_Saccharopolyspora_hattusasensis-_-JN989298--_CR3506_T':0.01191,'AEYC01000092-_Saccharopolyspora_spinosa-_Saccharopolyspora_spinosa-_-AEYC01000092--_NRRL_18395_T':0.00352)n30518:0.00283)n30510:0.00566,'GQ381309-_Saccharopolyspora_phatthalungensis-_Saccharopolyspora_phatthalungensis-_-GQ381309--_SR8.15_T':0.0064)n30509:0.00495,(('EF687715-_Saccharopolyspora_qijiaojingensis-_Saccharopolyspora_qijiaojingensis-_-EF687715--_YIM_91168_T':0.03787,'JN010255-_Saccharopolyspora_rectivirgula-_Saccharopolyspora_rectivirgula-_-JN010255--_DSM_43747_T':0.03077)n30520:0.01923,('KM114900-_Saccharopolyspora_subtropica-_Saccharopolyspora_subtropica-_-KM114900--_T3_T':0.00714,'AF127526-_Saccharopolyspora_thermophila-_Saccharopolyspora_thermophila-_-AF127526--_216_T':0.02868)n30521:0.02508)n30519:0.00496)n30508:0.00425,(((((((('EU814512-_Saccharopolyspora_endophytica-_Saccharopolyspora_endophytica-_-EU814512--_YIM_61095_T':0.00211,'MG770869-_Saccharopolyspora_aridisoli-_Saccharopolyspora_aridisoli-_-MG770869--_16K404_T':0.00865)n30529:0.00634,'KX037095-_Saccharopolyspora_spongiae-_Saccharopolyspora_spongiae-_-KX037095--_CMAA_1452_T':0.00211)n30528:0.00493,'JQ819260-_Saccharopolyspora_dendranthemae-_Saccharopolyspora_dendranthemae-_-JQ819260--_KLBMP_1305_T':0.00211)n30527:0.00141,'FJ214364-_Saccharopolyspora_tripterygii-_Saccharopolyspora_tripterygii-_-FJ214364--_YIM_65359_T':0.00706)n30526:0.00141,('MG770750-_Saccharopolyspora_karakumensis-_Saccharopolyspora_karakumensis-_-MG770750--_5K548_T':0.00141,'MG770879-_Saccharopolyspora_terrae-_Saccharopolyspora_terrae-_-MG770879--_16K309_T':0.0007)n30530:0.00141)n30525:0.00707,'AF154128-_Saccharopolyspora_flava-_Saccharopolyspora_flava-_-AF154128--_AS4.1520T_T':0.01839)n30524:0.00781,'MH244320-_Saccharopolyspora_rhizosphaerae-_Saccharopolyspora_rhizosphaerae-_-MH244320--_H219_T':0.01732)n30523:0.00425,('MF480321-_Saccharopolyspora_deserti-_Saccharopolyspora_deserti-_-MF480321--_SYSU_D8010_T':0.01547,'DQ923129-_Saccharopolyspora_halophila-_Saccharopolyspora_halophila-_-DQ923129--_YIM_90500_T':0.01689)n30531:0.00568)n30522:0.00708)n30507:0.00142,'EF030715-_Saccharopolyspora_cebuensis-_Saccharopolyspora_cebuensis-_-EF030715--_SPE_10-1_T':0.01688)n30506:0.00143)1835:0.02926)n30351:0.02001,(((((('AB511316-_Actinophytocola_corallina-_Actinophytocola_corallina-_-AB511316--_NBRC_105525_T':0.0113,'AB511315-_Actinophytocola_timorensis-_Actinophytocola_timorensis-_-AB511315--_NBRC_105524_T':0.00778)n30537:0.00142,'MG190031-_Actinophytocola_glycyrrhizae-_Actinophytocola_glycyrrhizae-_-MG190031--_BMP_B8152_T':0.00918)n30536:0.0213,'EU420070-_Actinophytocola_oryzae-_Actinophytocola_oryzae-_-EU420070--_GMKU_367_T':0.01201)n30535:0.00143,'AB535095-_Actinophytocola_burenkhanensis-_Actinophytocola_burenkhanensis-_-AB535095--_MN08-A0203_T':0.01695)n30534:0.00926,'KU242749-_Actinophytocola_algeriensis-_Actinophytocola_algeriensis-_-KU242749--_MB20_T':0.01909)n30533:0.00357,((('KJ013500-_Actinophytocola_sediminis-_Actinophytocola_sediminis-_-KJ013500--_YIM_M13705_T':0.01059,'EU274339-_Actinophytocola_xinjiangensis-_Actinophytocola_xinjiangensis-_-EU274339--_QAIII60_T':0.00353)n30540:0.00357,'KX083521-_Actinophytocola_xanthii-_Actinophytocola_xanthii-_-KX083521--_KCTC_39690_T':0.01201)n30539:0.02843,'KF955588-_Actinophytocola_gilvus-_Actinophytocola_gilvus-_-KF955588--_I12A-02593_T':0.01424)n30538:0.00715)695999:0.00714)n30350:0.00646,'KX128908-_Herbihabitans_rhizosphaerae-_Herbihabitans_rhizosphaerae-_-KX128908--_CPCC_204279_T':0.04577)n30349:0.00789,(((((((((((((((((('EU921261-_Pseudonocardia_acaciae-_Pseudonocardia_acaciae-_-EU921261--_GMKU095_T':0.02954,'AUII01000066-_Pseudonocardia_asaccharolytica-_Pseudonocardia_asaccharolytica-_-AUII01000066--_DSM_44247_T':0.01685)n30558:0.00357,('AB514449-_Pseudonocardia_babensis-_Pseudonocardia_babensis-_-AB514449--_VN05A0561_T':0.02756,'FR695486-_Pseudonocardia_hispaniensis-_Pseudonocardia_hispaniensis-_-FR695486--_PA3_T':0.0219)n30559:0.00714)n30557:0.0099,(('GU227146-_Pseudonocardia_artemisiae-_Pseudonocardia_artemisiae-_-GU227146--_YIM_63587_T':0.00777,'FJ817375-_Pseudonocardia_bannensis-_Pseudonocardia_bannensis-_-FJ817375--_YIM_63101_T':0.00141)n30561:0.024,'MT361117-_Pseudonocardia_acidicola-_Pseudonocardia_acidicola-_-MT361117--_K10HN5_T':0.00912)n30560:0.00213)n30556:0.00849,'AJ252829-_Pseudonocardia_saturnea-_Pseudonocardia_saturnea-_-AJ252829--_IMSNU_20052T_T':0.01264)n30555:0.00284,'KY242511-_Pseudonocardia_nigra-_Pseudonocardia_nigra-_-KY242511--_ATK03_T':0.01345)n30554:0.00212,'EU722520-_Pseudonocardia_xinjiangensis-_Pseudonocardia_xinjiangensis-_-EU722520--_XJ_45_T':0.01055)n30553:0.00354,(((('MT860127-_Pseudonocardia_broussonetiae-_Pseudonocardia_broussonetiae-_-MT860127--_Gen_01_T':0.00211,'MH725295-_Pseudonocardia_oceani-_Pseudonocardia_oceani-_-MH725295--_KRD-185_T':0.00219)n30565:0.01833,'AJ252828-_Pseudonocardia_petroleophila-_Pseudonocardia_petroleophila-_-AJ252828--_IMSNU_22072T_T':0.00352)n30564:0,'MH725312-_Pseudonocardia_abyssalis-_Pseudonocardia_abyssalis-_-MH725312--_KRD-168_T':0.00371)n30563:0.00494,'FJ817379-_Pseudonocardia_seranimata-_Pseudonocardia_seranimata-_-FJ817379--_YIM_63233_T':0.00501)n30562:0.00636)n30552:0.0085,(((('FR733722-_Pseudonocardia_alaniniphila-_Pseudonocardia_alaniniphila-_-FR733722--_DSM44660_T':0.00141,'AJ252822-_Pseudonocardia_yunnanensis-_Pseudonocardia_yunnanensis-_-AJ252822--_IMSNU_22019_T':0.00282)n30569:0.00425,'JQ864427-_Pseudonocardia_salamisensis-_Pseudonocardia_salamisensis-_-JQ864427--_K236_T':0.0141)n30568:0.01136,'FR749916-_Pseudonocardia_aurantiaca-_Pseudonocardia_aurantiaca-_-FR749916--_DSM_44773_T':0.01417)n30567:0.00071,('AJ249206-_Pseudonocardia_spinosispora-_Pseudonocardia_spinosispora-_-AJ249206--_LM_141_LTP_[T]_T':0.01481,'AB547126-_Pseudonocardia_spinosa-_Pseudonocardia_spinosa-_-AB547126--_JCM_3136_T':0.02329)n30570:0.02563)n30566:0.00284)n30551:0.00142,(((('FJ805427-_Pseudonocardia_adelaidensis-_Pseudonocardia_adelaidensis-_-FJ805427--_EUM_221_T':0.01143,'AF325725-_Pseudonocardia_zijingensis-_Pseudonocardia_zijingensis-_-AF325725--_6330_LTP_[T]_T':0.00853)n30574:0.00427,('HQ157191-_Pseudonocardia_cypriaca-_Pseudonocardia_cypriaca-_-HQ157191--_KT2142_T':0.00564,'JN989288-_Pseudonocardia_hierapolitana-_Pseudonocardia_hierapolitana-_-JN989288--_PM2084_T':0.00493)n30575:0.00283)n30573:0.00636,('FJ817377-_Pseudonocardia_kunmingensis-_Pseudonocardia_kunmingensis-_-FJ817377--_YIM_63158_T':0.00072,'HM153789-_Pseudonocardia_sichuanensis-_Pseudonocardia_sichuanensis-_-HM153789--_KLBMP_1115_T':0.00212)n30576:0.00567)n30572:0.00355,((('AB521672-_Pseudonocardia_khuvsgulensis-_Pseudonocardia_khuvsgulensis-_-AB521672--_MN08-A0297_T':0.00282,'GU322368-_Pseudonocardia_rhizophila-_Pseudonocardia_rhizophila-_-GU322368--_YIM_67013_T':0.00424)n30579:0.00214,'EF588218-_Pseudonocardia_thermophila-_Pseudonocardia_thermophila-_-EF588218--_NRRL_B-1978_T':0.02909)n30578:0.01999,'AB521671-_Pseudonocardia_mongoliensis-_Pseudonocardia_mongoliensis-_-AB521671--_MN08-A0270_T':0.0226)n30577:0.00142)n30571:0.00497)n30550:0.00496,('AF454510-_Pseudonocardia_chloroethenivorans-_Pseudonocardia_chloroethenivorans-_-AF454510--_SL-1_T':0.01762,'KF564279-_Pseudonocardia_sediminis-_Pseudonocardia_sediminis-_-KF564279--_YIM_M13141_T':0.02188)n30580:0.00071)n30549:0.00567,'KT751083-_Pseudonocardia_profundimaris-_Pseudonocardia_profundimaris-_-KT751083--_GY0556_T':0.01268)n30548:0.00924,((('CP002593-_Pseudonocardia_dioxanivorans-_Pseudonocardia_dioxanivorans-_-CP002593--_CB1190_T':0,'AJ556156-_Pseudonocardia_benzenivorans-_Pseudonocardia_benzenivorans-_-AJ556156--_B5_T':0.00071)n30583:0.01131,('AJ252826-_Pseudonocardia_hydrocarbonoxydans-_Pseudonocardia_hydrocarbonoxydans-_-AJ252826--_IMSNU_22140T_T':0.00141,'Y08537-_Pseudonocardia_sulfidoxydans-_Pseudonocardia_sulfidoxydans-_-Y08537--_DSM_44248_T':0.00071)n30584:0.00141)n30582:0.00142,'AJ249200-_Pseudonocardia_tetrahydrofuranoxydans-_Pseudonocardia_tetrahydrofuranoxydans-_-AJ249200--_K1_T':0.00989)n30581:0.00639)n30547:0.00924,(((((('MF188864-_Pseudonocardia_lutea-_Pseudonocardia_lutea-_-MF188864--_NEAU-G57_T':0.00989,'JN656709-_Pseudonocardia_yuanmonensis-_Pseudonocardia_yuanmonensis-_-JN656709--_YIM_75926_T':0.00282)n30590:0.01278,'KY859773-_Pseudonocardia_mangrovi-_Pseudonocardia_mangrovi-_-KY859773--_SMC_195_T':0.00071)n30589:0.00709,('JN989287-_Pseudonocardia_kujensis-_Pseudonocardia_kujensis-_-JN989287--_A4038_T':0.00071,'OL913129-_Pseudonocardia_terrae-_Pseudonocardia_terrae-_-OL913129--_RS11V-5_T':0.00707)n30591:0.01135)n30588:0.00213,'AJ252827-_Pseudonocardia_halophobica-_Pseudonocardia_halophobica-_-AJ252827--_IMSNU_21327T_T':0.00776)n30587:0.00709,(('DQ344632-_Pseudonocardia_ailaonensis-_Pseudonocardia_ailaonensis-_-DQ344632--_YIM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i-_-EU551682--_C68_T':0.00142,'EU551683-_Lentzea_roselyniae-_Lentzea_roselyniae-_-EU551683--_C81_T':0)n30680:0.00283,'EU551684-_Lentzea_atacamensis-_Lentzea_atacamensis-_-EU551684--_C61_T':0)531938:0.00709,'DQ898283-_Lentzea_xinjiangensis-_Lentzea_xinjiangensis-_-DQ898283--_R24_T':0.00716)n30678:0.00568,('AF114808-_Lentzea_flava-_Lentzea_flava-_-AF114808--_NRRL_B-16131T_T':0.0099,'JN989291-_Lentzea_nigeriaca-_Lentzea_nigeriaca-_-JN989291--_NJ2035_T':0.01061)n30681:0.00213)n30677:0.00783,'KY465494-_Lentzea_tibetensis-_Lentzea_tibetensis-_-KY465494--_FXJ1.1311_T':0.01767)n30676:0.00142)n30659:0.00142,'AY114175-_Lentzea_fradiae-_Lentzea_fradiae-_-AY114175--_AS_4.3506_T':0.005)165301:0.00851,(('AB303364-_Actinosynnema_pretiosum_subsp._auranticum-_Actinosynnema_pretiosum_subsp._auranticum-_-AB303364--_NBRC_15620_T':0.00071,'AF328679-_Actinosynnema_mirum-_Actinosynnema_mirum-_-AF328679--_IMSNU_20048T_-IFO_14064T-_T':0.00282)n30683:0.00142,'AF114800-_Actinosynnema_pretiosum_subsp._pretiosum-_Actinosynnema_pretiosum_subsp._pretiosum-_-AF114800--_NRRL_B-16060T_T':0.01559)40566+42197:0.01063)n30657:0.00142,((((((((((('HE804045-_Saccharothrix_espanaensis-_Saccharothrix_espanaensis-_-HE804045--_DSM_44229_T':0.00142,('X76966-_Saccharothrix_mutabilis_subsp._mutabilis-_Saccharothrix_mutabilis_subsp._mutabilis-_-X76966--_ssp._mutabilis-_DSM_43853_T':0.00143,'X76965-_Saccharothrix_mutabilis_subsp._capreolus-_Saccharothrix_mutabilis_subsp._capreolus-_-X76965--_DSM_40225_T':0.00286)33921:0.01137)n30694:0.00213,'GQ917213-_Saccharothrix_variisporea-_Saccharothrix_variisporea-_-GQ917213--_NRRL_B-16296_LTP_[T]_T':0.00778)n30693:0.00142,'KY021820-_Saccharothrix_ghardaiensis-_Saccharothrix_ghardaiensis-_-KY021820--_MB46_T':0.00636)n30692:0.00426,(('AY054972-_Saccharothrix_algeriensis-_Saccharothrix_algeriensis-_-AY054972--_NRRL_B-24137_T':0.00639,'AF114803-_Saccharothrix_australiensis-_Saccharothrix_australiensis-_-AF114803--_NRRL_11239T_T':0.00292)n30697:0.00356,'AB284261-_Saccharothrix_violaceirubra-_Saccharothrix_violaceirubra-_-AB284261--_NBRC_102064_T':0.01697)n30696:0.00427)n30691:0.00284,('AF114805-_Saccharothrix_coeruleofusca-_Saccharothrix_coeruleofusca-_-AF114805--_NRRL_B-16115T_T':0.00847,'AF114812-_Saccharothrix_syringae-_Saccharothrix_syringae-_-AF114812--_NRRL_B-16468T_T':0.00707)n30698:0.00142)n30690:0.00142,'AB381939-_Saccharothrix_xinjiangensis-_Saccharothrix_xinjiangensis-_-AB381939--_NBRC_101911_T':0.00424)n30689:0.00071,(('AF114814-_Saccharothrix_texasensis-_Saccharothrix_texasensis-_-AF114814--_NRRL_B-16134_T':0.01204,'JN002085-_Saccharothrix_stipae-_Saccharothrix_stipae-_-JN002085--_D34_T':0.00855)n30700:0.00922,('FJ379333-_Saccharothrix_saharensis-_Saccharothrix_saharensis-_-FJ379333--_Sa152_T':0.00212,'KC195859-_Saccharothrix_carnea-_Saccharothrix_carnea-_-KC195859--_NEAU-yn17_T':0.00353)n30701:0)n30699:0.00993)n30688:0.00284,'KJ504176-_Saccharothrix_tamanrassetensis-_Saccharothrix_tamanrassetensis-_-KJ504176--_SA198_T':0.01066)n30687:0.00781,('KP992900-_Saccharothrix_lopnurensis-_Saccharothrix_lopnurensis-_-KP992900--_YIM_LPA2h_T':0.00847,'MF972516-_Saccharothrix_deserti-_Saccharothrix_deserti-_-MF972516--_BMP8144_T':0.00494)n30702:0.00781)n30686:0,(('KU933253-_Saccharothrix_isguenensis-_Saccharothrix_isguenensis-_-KU933253--_MB27_T':0.00145,'JN038074-_Saccharothrix_ecbatanensis-_Saccharothrix_ecbatanensis-_-JN038074--_UTMC_00537_T':0)n30704:0.00849,'HQ399564-_Saccharothrix_hoggarensis-_Saccharothrix_hoggarensis-_-HQ399564--_SA181_T':0.00141)n30703:0.00708)n30685:0.00284,'AF114809-_Saccharothrix_longispora-_Saccharothrix_longispora-_-AF114809--_NRRL_B-16116_T':0.00708)2071:0.01419)n30656:0.00997,('JF789453-_Actinorectispora_indica-_Actinorectispora_indica-_-JF789453--_YIM_75728_T':0.02588,'KU992914-_Actinorectispora_metalli-_Actinorectispora_metalli-_-KU992914--_KC_198_T':0.00353)1769723:0.01428)n30655:0.00214,(('KP984506-_Umezawaea_endophytica-_Umezawaea_endophytica-_-KP984506--_YIM_2047X_T':0.00707,'AB020031-_Umezawaea_tangerina-_Umezawaea_tangerina-_-AB020031--_MK27-91F2_T':0.00565)583360:0.01781,'KX762322-_Solihabitans_fulvus-_Solihabitans_fulvus-_-KX762322--_AN110305_T':0.01845)n30706:0.00857)n30654:0.00213)n30346:0.00214,((('AJ512462-_Allokutzneria_albata-_Allokutzneria_albata-_-AJ512462--_DSM_44149_T':0.00776,'JQ306329-_Allokutzneria_multivorans-_Allokutzneria_multivorans-_-JQ306329--_YIM_120521_T':0.01268)n30710:0.00498,'AB841026-_Allokutzneria_oryzae-_Allokutzneria_oryzae-_-AB841026--_R8-39_T':0.00635)1137960:0.00995,('AF114806-_Crossiella_cryophila-_Crossiella_cryophila-_-AF114806--_NRRL_B-16238_T':0.0106,'AF245017-_Crossiella_equi-_Crossiella_equi-_-AF245017--_NRRL_B-24104_T':0.00988)130795:0.01354)n30708:0.00784)n30345:0.00143,(((('HG917901-_Actinoalloteichus_cyanogriseus-_Actinoalloteichus_cyanogriseus-_-HG917901--_DSM_40103_T':0.00284,'AY426714-_Actinoalloteichus_spitiensis-_Actinoalloteichus_spitiensis-_-AY426714--_MTCC_6194_T':0.00142)n30715:0.03275,(('KJ504175-_Actinoalloteichus_hoggarensis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atrialba_magadii-_Natrialba_magadii-_-CP001932--_ATCC_43099_T':0.00733,'AB663457-_Natrialba_hulunbeirensis-_Natrialba_hulunbeirensis-_-AB663457--_JCM_10989_T':0.00147)n37072:0.00295,'AJ004806-_Natrialba_chahannaoensis-_Natrialba_chahannaoensis-_-AJ004806--_C112_T':0.00955)n37071:0.01032,('AB663477-_Natronorubrum_tibetense-_Natronorubrum_tibetense-_-AB663477--_JCM_10636_T':0.00665,'AB935414-_Natronorubrum_texcoconense-_Natronorubrum_texcoconense-_-AB935414--_JCM_17497_T':0.00512)n37073:0.02501)n37070:0.01708,(((('AF251941-_Natrialba_aegyptia-_Natrialba_aegyptia-_-AF251941--_JCM_11194_LTP_[T]_T':0.00073,'AB663459-_Natrialba_taiwanensis-_Natrialba_taiwanensis-_-AB663459--_JCM_9577_T':0.00219)n37077:0.00659,'AB663455-_Natrialba_asiatica-_Natrialba_asiatica-_-AB663455--_JCM_9576_T':0.00219)n37076:0.02812,'KT247962-_Natrarchaeobius_chitinivorans-_Natrarchaeobius_chitinivorans-_-KT247962--_AArcht4_T':0.03235)n37075:0.00522,'MN378559-_Natrialba_swarupiae-_Natrialba_swarupiae-_-MN378559--_ESP3B_9_T':0.02414)n37074:0.00887)63742:0.00814,((('DQ535889-_Natronorubrum_sulfidifaciens-_Natronorubrum_sulfidifaciens-_-DQ535889--_AD2_T':0.02353,'KR012974-_Natronorubrum_halophilum-_Natronorubrum_halophilum-_-KR012974--_SHR37_T':0.01899)n37080:0.00223,(('AB663475-_Natronorubrum_sediminis-_Natronorubrum_sediminis-_-AB663475--_JCM_15982_T':0,'AB771436-_Natronococcus_roseus-_Natronococcus_roseus-_-AB771436--_JCM_17958_T':0)n37082:0,'AB663442-_Natronorubrum_daqingense-_Natronorubrum_daqingense-_-AB663442--_NBRC_105739_T':0.00073)n37081:0.02941)n37079:0.0089,('Y14028-_Natronorubrum_bangense-_Natronorubrum_bangense-_-Y14028--_A33_T':0.01696,'DQ205516-_Natronorubrum_aibiense-_Natronorubrum_aibiense-_-DQ205516--_7-3_T':0.02487)n37083:0.01406)n37078:0.00813)134813:0.00445,'KT247971-_Natrarchaeobius_halalkaliphilus-_Natrarchaeobius_halalkaliphilus-_-KT247971--_AArcht-Sl_T':0.03874)2501796:0.00371)n37041:0.00519,(((('AB125106-_Natronolimnobius_baerhuensis-_Natronolimnobius_baerhuensis-_-AB125106--_IHC-005_T':0.02808,'MK226479-_Salinadaptatus_halalkaliphilus-_Salinadaptatus_halalkaliphilus-_-MK226479--_XQ-INN_246_T':0.03658)n37087:0.00895,'AOHZ01000042-_Natronolimnohabitans_innermongolicus-_Natronolimnohabitans_innermongolicus-_-AOHZ01000042--_JCM_12255_T':0.028)n37086:0.00518,('KY612364-_Natrarchaeobaculum_sulfurireducens-_Natrarchaeobaculum_sulfurireducens-_-KY612364--_AArc1_T':0.02418,'KX857214-_Natrarchaeobaculum_aegyptiacum-_Natrarchaeobaculum_aegyptiacum-_-KX857214--_JW_T':0.02558)2765402:0.0067)n37085:0.01481,((((('AB663437-_Halopiger_aswanensis-_Halopiger_aswanensis-_-AB663437--_JCM_11628_T':0.00293,'AB844674-_Halopiger_thermotolerans-_Halopiger_thermotolerans-_-AB844674--_SR-441_T':0.01025)n37093:0.00442,'AM268114-_Halopiger_xanaduensis-_Halopiger_xanaduensis-_-AM268114--_SH-6_T':0.00226)n37092:0.01179,'CBMA010000055-_Halopiger_djelfimassiliensis-_Halopiger_djelfimassiliensis-_-CBMA010000055--_IIH2_T':0.02849)n37091:0.00447,'AB935410-_Natrinema_salifodinae-_Natrinema_salifodinae-_-AB935410--_JCM_18547_T':0.03658)n37090:0.00817,'CBMB010000011-_Halopiger_goleimassiliensis-_Halopiger_goleimassiliensis-_-CBMB010000011--_IIH3_T':0.02268)387342:0.01558)n37084:0.00445)88723:0.00593,(((('AB477232-_Natronococcus_jeotgali-_Natronococcus_jeotgali-_-AB477232--_JCM_14583_T':0.02061,'AB477981-_Natronococcus_occultus-_Natronococcus_occultus-_-AB477981--_JCM_8859_T':0.01768)n37097:0.02663,'D43628-_Natronococcus_amylolyticus-_Natronococcus_amylolyticus-_-D43628--_Ah-36_-FERM_P-11024-_T':0.02947)n37096:0.00298,('AOIQ01000016-_Halovivax_asiaticus-_Halovivax_asiaticus-_-AOIQ01000016--_JCM_14624_T':0,'AB663453-_Halovivax_ruber-_Halovivax_ruber-_-AB663453--_JCM_13892_T':0.00662)n37098:0.0456)n37095:0.01411,((('AY277582-_Halobiforma_lacisalsi-_Halobiforma_lacisalsi-_-AY277582--_AJ5_T':0.00513,'AB663434-_Halobiforma_haloterrestris-_Halobiforma_haloterrestris-_-AB663434--_JCM_11627_T':0.00219)n37101:0.02949,'AB663436-_Halobiforma_nitratireducens-_Halobiforma_nitratireducens-_-AB663436--_JCM_10879_T':0.01975)203193:0.01709,('AB663467-_Natronobacterium_gregoryi-_Natronobacterium_gregoryi-_-AB663467--_JCM_17874_T':0.02355,'AB935412-_Natronobacterium_texcoconense-_Natronobacterium_texcoconense-_-AB935412--_JCM_17655_T':0.0095)2256:0.02373)n37099:0.0089)n37094:0.00371)29287:0.01114,(((('KF739019-_Natribaculum_longum-_Natribaculum_longum-_-KF739019--_TRM20345_T':0.00292,'KM596804-_Halovarius_luteus-_Halovarius_luteus-_-KM596804--_DA50_T':0.0095)n37106:0.00741,'KF739011-_Natribaculum_breve-_Natribaculum_breve-_-KF739011--_TRM20010_T':0.01609)1699375:0.03251,('KY419833-_Saliphagus_infecundisoli-_Saliphagus_infecundisoli-_-KY419833--_YIM_93745_T':0.02703,'KT247980-_Natronobiforma_cellulositropha-_Natronobiforma_cellulositropha-_-KT247980--_AArcel5_T':0.04745)n37107:0.00823)n37104:0.00594,('KJ406208-_Halovivax_cerinus-_Halovivax_cerinus-_-KJ406208--_IC35_T':0.01534,'KF805151-_Halovivax_limisalsi-_Halovivax_limisalsi-_-KF805151--_IC38_T':0.01098)n37108:0.01777)n3710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diff --git a/inst/scripts/get_living.tree.R b/inst/scripts/get_living.tree.R index 98c6d72..91c417b 100644 --- a/inst/scripts/get_living.tree.R +++ b/inst/scripts/get_living.tree.R @@ -26,7 +26,6 @@ not_missing_anymore_taxa <- taxizedb::name2taxid(missing_taxa, db = 'ncbi') taxids[which(is.na(taxids))] <- not_missing_anymore_taxa taxonomy <- taxizedb::classification(unique(taxids), db = 'ncbi') -x <- taxonomy missing_taxonomy_positions <- which(map_lgl(taxonomy, ~ all(is.na(.x)))) not_missing_anymore_taxonomy <- taxize::classification( names(missing_taxonomy_positions), db = 'ncbi' @@ -99,8 +98,8 @@ mrcas_df <- mrcas_df |> nodes <- data.frame(node = length(tree$tip.label) + 1:tree$Nnode) |> left_join(mrcas_df, by = 'node') |> mutate( - node_label = ifelse(is.na(node_label), '', node_label), - n_labels = ifelse(is.na(n_labels), 0, n_labels) + node_label = ifelse(is.na(node_label), paste0('n', node), node_label), + n_labels = ifelse(is.na(n_labels), 0, n_labels), ) tree$node.label <- nodes$node_label diff --git a/vignettes/articles/phytools.Rmd b/vignettes/articles/phytools.Rmd index 9803901..094521f 100644 --- a/vignettes/articles/phytools.Rmd +++ b/vignettes/articles/phytools.Rmd @@ -139,12 +139,8 @@ phys_data_ready <- left_join(set_with_ids, set_without_ids) -```{r} -tree <- ltp() -system.time( - data_tree <- as.Node(tree, heightName = NULL) -) -``` + + @@ -275,4 +271,3 @@ plot(ace, args.plotTree = list(direction = "upwards")) tips <- sapply(labs, function(x, y) which(y == x), y = tree$tip.label) add.arrow(tree, tips, arrl = 3, offset = 2, lwd = 2, col = palette()[4]) ``` -