checks.yml

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: Checks

on:
  push:
    branches: [main]
  pull_request:
    branches: [main]

concurrency:
  # NOTE: the value of `group` should be chosen carefully,
  # otherwise we might end up over- or under-canceling workflow runs
  # github.head_ref is only defined for pull request events
  # so, if it's not present (i.e. event was triggered by push)
  # we use github.ref instead
  group: ${{ github.workflow }}-${{ github.head_ref || github.ref }}
  cancel-in-progress: true

defaults:
  run:
    # important to make sure that all commands on Windows are run using Bash
    # -l: login shell, needed when using Conda
    shell: bash -l {0}

env:
  # --color=yes needed for colorized output to be shown in GHA logs
  # --pyargs watertap is needed to be able to define CLI options in watertap/conftest.py
  PYTEST_ADDOPTS: "--color=yes"
  PIP_PROGRESS_BAR: "off"
  WATERTAP_KERNEL_NAME: watertap-dev

jobs:

  code-formatting:
    name: Check code is formatted (Black)
    # OS and/or Python version don't make a difference, so we choose ubuntu and 3.8 as defaults
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - uses: actions/setup-python@v5
        with:
          python-version: '3.11'
      - name: Install Black
        # unlike the other jobs, we don't need to install WaterTAP and/or all the dev dependencies,
        # but we still want to specify the Black version to use in requirements-dev.txt for local development
        # so we extract the relevant line and pass it to a simple `pip install`
        run: |
          black_requirement="$(grep '^black==' requirements-dev.txt)"
          pip --no-cache-dir install "$black_requirement"
      - name: Run Black to verify that the committed code is formatted
        run: |
          black --check .

  pylint:
    name: Code linting (pylint)
    runs-on: ubuntu-latest
    needs: [code-formatting]
    steps:
      - uses: actions/checkout@v4
      - uses: actions/setup-python@v5
        with:
          python-version: '3.11'
      - name: Install dev dependencies
        run: |
          pip install -r requirements-dev.txt
          pip list
      - name: Run pylint
        run: |
          pylint watertap

  tests:
    name: Tests (py${{ matrix.python-version }}/${{ matrix.os }})
    runs-on: ${{ matrix.os-version }}
    needs: [code-formatting]
    strategy:
      fail-fast: false
      matrix:
        python-version:
          - '3.9'
          - '3.10'
          - '3.11'
        os:
          - linux
          - win64
          # - macos
        include:
          - os: linux
            os-version: ubuntu-20.04
          - os: win64
            os-version: windows-2019
          # - os: macos
          #   os-version: macos-10.15
          - python-version: '3.10'
            # limit uploading coverage report for a single Python version in the matrix
            coverage: true
    steps:
    - uses: actions/checkout@v4
    - name: Set up Python ${{ matrix.python-version }}
      uses: conda-incubator/setup-miniconda@v3
      with:
        activate-environment: watertap-dev
        python-version: ${{ matrix.python-version }}
        miniforge-version: latest
    - name: Install dependencies
      run: |
        echo '::group::Output of "conda install" commands'
        conda install --quiet --yes pip setuptools wheel pandoc
        echo '::endgroup::'
        echo '::group::Output of "pip install" commands'
        pip install -r requirements-dev.txt
        echo '::endgroup::'
        echo '::group::Output of "conda install -c conda-forge cyipopt" command'
        conda install -c conda-forge cyipopt
        echo '::endgroup::'
        echo '::group::Display installed packages'
        conda list
        pip list
        pip show idaes-pse
        echo '::endgroup::'
        echo '::group::Output of "idaes get-extensions" command'
        idaes get-extensions --extra petsc --verbose
        echo '::endgroup::'
    - name: Add coverage report pytest options
      if: matrix.coverage
      run:
        |
        echo PYTEST_ADDOPTS="$PYTEST_ADDOPTS --cov-report=xml" >> $GITHUB_ENV
    - name: Test with pytest
      run: |
        pytest --pyargs watertap --idaes-flowsheets --entry-points-group watertap.flowsheets
    - name: Upload coverage report as job artifact
      if: matrix.coverage
      uses: actions/upload-artifact@v4
      with:
        name: coverage-report-${{ matrix.os }}
        path: coverage.xml
        if-no-files-found: error
    - name: Test documentation code
      run: |
        make -C docs doctest -d
    # TODO: this should be moved to a dedicated job/workflow
    # until then, we can leave this here as a reminder
    - name: Test documentation links
      if: 'false'
      run: |
        make -C docs linkcheck -d

  upload-coverage:
    name: Upload coverage report (Codecov)
    needs: [tests]
    runs-on: ubuntu-latest
    steps:
      # the checkout step is needed to have access to codecov.yml
      - uses: actions/checkout@v4
      - uses: actions/download-artifact@v4
        with:
          pattern: coverage-report-*
      - name: Upload coverage report to Codecov
        uses: codecov/codecov-action@v4
        with:
          fail_ci_if_error: true
          verbose: true
          # NOTE: secrets are not available for pull_request workflows
          # However, as of 2024-02-10, Codecov is still allowing tokenless upload from PRs
          # but does require token for other workflows e.g. merge to `main`
          # see https://github.com/codecov/codecov-action/issues/1274#issuecomment-1934437359
          token: ${{ secrets.CODECOV_TOKEN }}
          # downgrading after v0.7.0 broke tokenless upload
          # see codecov/codecov-action#1487
          version: v0.6.0

  user-mode-pytest:
    name: pytest (user mode) (py${{ matrix.python-version }}/${{ matrix.os }})
    runs-on: ${{ matrix.os-version }}
    needs: [code-formatting]
    strategy:
      fail-fast: false
      matrix:
        python-version:
          - '3.9'
          - '3.11'
        os:
          - linux
          - win64
        include:
          - os: linux
            os-version: ubuntu-20.04
          - os: win64
            os-version: windows-2019
    steps:
    - name: Set up Python ${{ matrix.python-version }}
      uses: conda-incubator/setup-miniconda@v3
      with:
        activate-environment: watertap
        python-version: ${{ matrix.python-version }}
    - name: Define install URL (default)
      env:
        _repo_full_name: watertap-org/watertap
        _ref_to_install: main
      run: |
        echo "_install_url=https://github.com/${_repo_full_name}/archive/${_ref_to_install}.zip" >> $GITHUB_ENV
    - name: Define install URL (for PRs)
      if: github.event.pull_request
      env:
        _repo_full_name: ${{ github.event.pull_request.head.repo.full_name }}
        _ref_to_install: ${{ github.event.pull_request.head.sha }}
      run:
        echo "_install_url=https://github.com/${_repo_full_name}/archive/${_ref_to_install}.zip" >> $GITHUB_ENV
    - name: Install watertap and testing dependencies
      run: |
        echo '::group::Output of "pip install" commands'
        pip install "watertap @ ${_install_url}" pytest
        echo '::endgroup::'
        echo '::group::Display installed packages'
        conda list
        pip list
        pip show idaes-pse
        echo '::endgroup::'
        echo '::group::Output of "idaes get-extensions" command'
        idaes get-extensions --extra petsc --verbose
        echo '::endgroup::'
    - name: Run pytest
      run: |
        pytest --pyargs watertap

  notebooks:
    name: Test notebooks (py${{ matrix.python-version }}/${{ matrix.os }})
    runs-on: ${{ matrix.os-version }}
    needs: [code-formatting]
    strategy:
      fail-fast: false
      matrix:
        python-version:
          - '3.9'
          - '3.11'
        os:
          - linux
          - win64
        include:
          - os: linux
            os-version: ubuntu-20.04
          - os: win64
            os-version: windows-2019
    steps:
    - uses: actions/checkout@v4
    - name: Set up Python ${{ matrix.python-version }}
      uses: conda-incubator/setup-miniconda@v3
      with:
        activate-environment: watertap-dev
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        echo '::group::Output of "conda install" commands'
        conda install --quiet --yes pip setuptools wheel pandoc
        echo '::endgroup::'
        echo '::group::Output of "pip install" commands'
        pip install -r requirements-dev.txt
        echo '::endgroup::'
        echo '::group::Display installed packages'
        conda list
        pip list
        pip show idaes-pse
        echo '::endgroup::'
        echo '::group::Output of "idaes get-extensions" command'
        idaes get-extensions --extra petsc --verbose
        echo '::endgroup::'
    - name: Install Jupyter kernel
      run: |
        jupyter kernelspec list
        python -m ipykernel install --user --name "${{ env.WATERTAP_KERNEL_NAME }}"
        jupyter kernelspec list

    - name: Run pytest with nbmake
      run: |
        pytest --nbmake --nbmake-kernel="${{ env.WATERTAP_KERNEL_NAME }}" **/*.ipynb

  macos:
    name: macOS setup (EXPERIMENTAL)
    runs-on: macos-13
    needs: [code-formatting]
    strategy:
      fail-fast: false
      matrix:
        python-version:
          - '3.9'
    steps:
    - uses: actions/checkout@v4
    - name: Set up Python ${{ matrix.python-version }}
      uses: conda-incubator/setup-miniconda@v3
      with:
        activate-environment: watertap
        python-version: ${{ matrix.python-version }}
    - name: Install WaterTAP (dev) without idaes get-extensions
      run: |
        echo '::group::Output of "conda install" commands'
        conda install --quiet --yes pip=21.1 wheel setuptools pandoc
        echo '::endgroup::'
        echo '::group::Output of "pip install" commands'
        pip install -r requirements-dev.txt
        echo '::endgroup::'
        echo '::group::Display installed packages'
        conda list
        pip list
        pip show pyomo idaes-pse
        echo '::endgroup::'
    - name: Install Ipopt from conda-forge
      run:
        conda install --quiet --yes -c conda-forge ipopt=3.14.11
    - name: Build Pyomo extensions
      run: |
        conda install --quiet --yes cmake
        # some failures are expected, but this should succeed as long as pynumero is built correctly
        pyomo build-extensions || python -c "from pyomo.contrib.pynumero.asl import AmplInterface; exit(0) if AmplInterface.available() else exit(1)"
    - name: Run pytest
      run: |
        pytest --pyargs watertap -k 'not (nf_dspmde.nf_ui or nf_dspmde.nf_with_bypass_ui or mvc.mvc_single_stage_ui or full_water_resource_recovery_facility.BSM2_P_extension_ui )'