Incorrect order and naming

[shannoneagle]

In the command, I listed my files in the order I wanted them and provided names for the files in the same order. The summary stats are correct. However, the charts are in alphabetical order (not the order I provided). The labels are correct on the first chart (both data and labels are in alphabetical order). However, the following charts use the name order I provided, but the data is in alphabetical order.

[wdecoster]

Thanks for reporting this. Just to make sure, you were using the latest version right?

[shannoneagle]

I have version 1.19.0.

[wdecoster]

At least some of this problem should be fixed in version 1.19.1 (as reported in #58). I have now pushed v1.19.2, which further made sure the order wasn't changed for some plots. I think everything should be alright now, but don't hesitate to let me know if you see further issues.

[shannoneagle]

I have updated to v1.19.3. however, I'm still having some issues. All the labels on the plots are now associated with the correct data. However, the first plot (Comparing number of reads) in the report does not show the data in the order I provided.