XML to CSV.ipynb

{
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    {
     "name": "stdout",
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      "/data3/wv2019/data/processed/PLIC_MILANO_PNG_CROPPED_V4/PLAQUE1/PLIC39/20131108/conv_DB8ARN98.png\n",
      "/data3/wv2019/data/processed/PLIC_MILANO_PNG_CROPPED_V4/PLAQUE1/PLIC39/20131108/conv_DB8ARN08.png\n",
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      "/data3/wv2019/data/processed/PLIC_MILANO_PNG_CROPPED_V4/PLAQUE1/PLIC1026/20130509/conv_D599S40Q.png\n",
      "/data3/wv2019/data/processed/PLIC_MILANO_PNG_CROPPED_V4/PLAQUE1/PLIC1026/20130509/conv_D599S3DU.png\n",
      "/data3/wv2019/data/processed/PLIC_MILANO_PNG_CROPPED_V4/PLAQUE1/PLIC1026/20130509/conv_D599S34S.png\n",
      "/data3/wv2019/data/processed/PLIC_MILANO_PNG_CROPPED_V4/PLAQUE1/PLIC1026/20130509/conv_D599S3DM.png\n"
     ]
    }
   ],
   "source": [
    "import xml.etree.ElementTree as ET\n",
    "import csv\n",
    "import glob\n",
    "import os\n",
    "\n",
    "for fn in glob.glob(os.path.join(\"/data3/wv2019/data/processed/PLIC_MILANO_PNG_CROPPED_V4/PLAQUE1\", \"*\", \"*\", \"*\"), recursive=True):\n",
    "    \n",
    "    if fn.endswith('.xml'):\n",
    "        img_png = fn.replace('.xml', '') \n",
    "        img_png += '.png'\n",
    "        print(img_png)\n",
    "        \n",
    "        os.system(f\"cp {img_png} /home/webvalley/Documents/plaque-image-preprocessing/Data/Raw\")\n",
    "        \"\"\"\n",
    "        imagename = fn.split('/')[-1].replace('.xml', '')\n",
    "        \n",
    "        tree = ET.parse(fn)\n",
    "        root = tree.getroot()\n",
    "\n",
    "        # open a file for writing\n",
    "        label_data = open(f'/home/webvalley/Documents/plaque-image-preprocessing/CSVs/{imagename}.csv', 'w')\n",
    "\n",
    "        # create the csv writer object\n",
    "\n",
    "        csvwriter = csv.writer(label_data)\n",
    "        label_head = []\n",
    "\n",
    "        count = 0\n",
    "        for member in root.findall('object'):\n",
    "            label = []\n",
    "            if count == 0:\n",
    "                label_head.append('image_names')\n",
    "                name = member.find('name').tag\n",
    "                label_head.append(name)\n",
    "                for detail in member.findall('bndbox'):\n",
    "                    xmin = detail.find('xmin').tag\n",
    "                    label_head.append(xmin)\n",
    "                    xmax = detail.find('xmax').tag\n",
    "                    label_head.append(xmax)\n",
    "                    ymin = detail.find('ymin').tag\n",
    "                    label_head.append(ymin)\n",
    "                    ymax = detail.find('ymax').tag\n",
    "                    label_head.append(ymax)\n",
    "                csvwriter.writerow(label_head)\n",
    "                count = count + 1\n",
    "\n",
    "\n",
    "            label.append(imagename)\n",
    "            name = member.find('name').text\n",
    "            label.append(name)\n",
    "            for detail in member.findall('bndbox'):\n",
    "                xmin = detail.find('xmin').text\n",
    "                label.append(xmin)\n",
    "                xmax = detail.find('xmax').text\n",
    "                label.append(xmax)\n",
    "                ymin = detail.find('ymin').text\n",
    "                label.append(ymin)\n",
    "                ymax = detail.find('ymax').text\n",
    "                label.append(ymax)\n",
    "            csvwriter.writerow(label)\n",
    "        label_data.close()\"\"\"\n",
    "    \n",
    "        "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
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  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
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  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
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   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
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