From 85a0b3c183f68eede487444d0e977018690ba4e9 Mon Sep 17 00:00:00 2001 From: Matus Kosut Date: Sun, 11 Apr 2021 15:14:07 +0200 Subject: [PATCH] update and simplify conda environment steps --- conda_env/createCondaEnvSAIGE_steps.txt | 9 +++------ 1 file changed, 3 insertions(+), 6 deletions(-) diff --git a/conda_env/createCondaEnvSAIGE_steps.txt b/conda_env/createCondaEnvSAIGE_steps.txt index 5b2b86d67..a6ecc9d07 100644 --- a/conda_env/createCondaEnvSAIGE_steps.txt +++ b/conda_env/createCondaEnvSAIGE_steps.txt @@ -1,8 +1,5 @@ -conda create -n RSAIGE r-essentials r-base=3.6.1 python=2.7 +conda create -n RSAIGE r-essentials r-base=4.0.3 python=2.7 conda activate RSAIGE -conda install -c anaconda cmake -conda install -c conda-forge gettext lapack r-matrix -conda install -c r r-rcpp r-rcpparmadillo r-data.table r-bh -conda install -c conda-forge r-spatest r-rcppeigen r-devtools r-skat r-rcppparallel r-optparse boost openblas -pip3 install cget click +conda install -n RSAIGE -c conda-forge cmake gettext lapack r-matrix r-rcpp r-rcpparmadillo r-data.table r-bh r-spatest r-rcppeigen r-devtools r-skat r-rcppparallel r-optparse bgenix boost openblas superlu cget +conda install -n RSAIGE -c bioconda savvy conda env export > environment-RSAIGE.yml