Skip to content

Latest commit

 

History

History
45 lines (34 loc) · 1.63 KB

README.md

File metadata and controls

45 lines (34 loc) · 1.63 KB
Raw

ARTIC tools

a set of tools for working with the ARTIC pipeline

CI Status Documentation Status bioconda License DOI

Overview

This collection of tools is being worked on and more utility is due to be added. For now, we have:

  • download primer schemes and reference sequences
  • primer scheme validation
  • alignment softmasking
  • vcf filtering

Read the docs for more info and checkout the ARTIC pipeline.

Install

conda

conda install -c bioconda artic-tools

source

You need CMake, Boost, HTSlib and a C++17 compiler. To download and install artic-tools run:

git clone --recursive https://github.com/will-rowe/artic-tools.git
mkdir artic-tools/build
cd artic-tools/build
cmake ..
make -j4
make test
../bin/artic-tools -h