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option to output GFA during indexing #17

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will-rowe opened this issue Apr 3, 2019 · 0 comments
Open

option to output GFA during indexing #17

will-rowe opened this issue Apr 3, 2019 · 0 comments
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enhancement New feature or request

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@will-rowe
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At the moment the graph is essentially in GFA format anyway as GROOT converts the input MSA to GFA before indexing, but it then serialises it with MessagePack. Could just add an option to write it in GFA too.

This will be useful for debugging as I'm extending GROOT beyond AMR genes.
@will-rowe will-rowe self-assigned this Apr 3, 2019
@will-rowe will-rowe added the enhancement New feature or request label Apr 3, 2019
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