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SF2BiomartMapping.txt
33 lines (33 loc) · 5.62 KB
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SF2BiomartMapping.txt
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gender SEX contact Female <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__female_bool" value="only" filter_list=""/>
men_status MENOPAUSALSTATUS diseasebreastcancerepisode Pre-Menopausal <Filter name="hsapiens_gene_breastCancer__resultsData__dm__menopausal_status" value="Premenopausal" filter_list=""/><Filter name="hsapiens_gene_breastCancer__resultsData__dm__menopausal_status" value="Premenopausal;Postmenopausal" filter_list=""/>
men_status MENOPAUSALSTATUS diseasebreastcancerepisode Post-Menopausal <Filter name="hsapiens_gene_breastCancer__resultsData__dm__menopausal_status" value="Postmenopausal" filter_list=""/><Filter name="hsapiens_gene_breastCancer__resultsData__dm__menopausal_status" value="Premenopausal;Postmenopausal" filter_list=""/>
er ERSTATUS diseasebreastcancerepisode Positive <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__er_pos_bool" value="only" filter_list=""/>
er ERSTATUS diseasebreastcancerepisode Negative <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__er_neg_bool" value="only" filter_list=""/>
pr PRSTATUS diseasebreastcancerepisode Positive <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__pr_pos_bool" value="only" filter_list=""/>
pr PRSTATUS diseasebreastcancerepisode Negative <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__pr_neg_bool" vvalue="only" filter_list=""/>/
her2 HER2 diseasebreastcancerepisode Positive <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__her2_pos_bool" value="only" filter_list=""/>
her2 HER2 diseasebreastcancerepisode Negative <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__her2_neg_bool" value="only" filter_list=""/>
grade GRADE diseasebreastcancerepisode Grade 1 <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__tumour_grade_1_bool" value="only" filter_list=""/>
grade GRADE diseasebreastcancerepisode Grade 2 <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__tumour_grade_2_bool" value="only" filter_list=""/>
grade GRADE diseasebreastcancerepisode Grade 3 <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__tumour_grade_3_bool" value="only" filter_list=""/>
stype SAMPLETYPE sample Frozen Tissue <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__Frozen_tissue_bool" value="only" filter_list=""/>
stype SAMPLETYPE sample Paraffin Embedded <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__Paraffin_embedded_tissue_bool" value="only" filter_list=""/>
stype SAMPLETYPE sample Whole Blood <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__Blood_bool" value="only" filter_list=""/>
stype SAMPLETYPE sample Serum <Filter name="hsapiens_gene_breastCancer__resultsData__dm__Serum_bool" value="only" filter_list=""/>
ttype TISSUETYPE sample Tumour <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__Malignant_lesion_bool" value="only" filter_list=""/>
ttype TISSUETYPE sample Normal Adjacent/Adjacent <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__Normal_adjacent_bool" value="only" filter_list=""/>
ttype TISSUETYPE sample Normal Surround/Normal Surround (>2cm) <Filter name="hsapiens_gene_breastCancer__resultsData__dm__Surrounding_normal_bool" value="only" filter_list=""/>
ttype TISSUETYPE sample Risk Reduction/Normal RR <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__Risk_reduction_bool" value="only" filter_list=""/>
ttype TISSUETYPE sample Reduction Mammoplasty <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__Reduction_mammoplasty_bool" value="only" filter_list=""/>
ttype TISSUETYPE sample Benign <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__Benign_lesion_bool" value="only" filter_list=""/>
ttype TISSUETYPE sample DCIS <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__malignant_lesions_1_bool" value="only" filter_list=""/>
ttype TISSUETYPE sample LCIS <Filter name="hsapiens_gene_breastCancer__resultsData__dm__malignant_lesions_2_bool" value="only" filter_list=""/>
ctype TYPEOFTUMOR diseasebreastcancerepisode No specific type/Infiltrating ductal carcinoma <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__malignant_lesions_4_bool" value="only" filter_list=""/>
ctype TYPEOFTUMOR diseasebreastcancerepisode Apocrine carcinoma <Filter name="hsapiens_gene_breastCancer__resultsData__dm__malignant_lesions_14_bool" value="only" filter_list=""/>
ctype TYPEOFTUMOR diseasebreastcancerepisode Infiltrating lobular carcinoma <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__malignant_lesions_5_bool" value="only" filter_list=""/>
ctype TYPEOFTUMOR diseasebreastcancerepisode Tubular carcinoma <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__malignant_lesions_6_bool" value="only" filter_list=""/>
ctype TYPEOFTUMOR diseasebreastcancerepisode Cribriform carcinoma <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__malignant_lesions_13_bool" value="only" filter_list=""/>
ctype TYPEOFTUMOR diseasebreastcancerepisode Mucinous carcinoma/Mucinous <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__malignant_lesions_7_bool" value="only" filter_list=""/>
ctype TYPEOFTUMOR diseasebreastcancerepisode Medullary-like carcinoma <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__malignant_lesions_8_bool" value="only" filter_list=""/>
ctype TYPEOFTUMOR diseasebreastcancerepisode Invasive micropapillary carcinoma/Invasive micropapillary <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__malignant_lesions_3_bool" value="only" filter_list=""/>
ctype TYPEOFTUMOR diseasebreastcancerepisode Metaplastic carcinoma <Filter name = "hsapiens_gene_breastCancer__resultsData__dm__with_malignant_lesions_9" value="only" filter_list=""/>