nextflow_schema.json

{
    "$schema": "http://json-schema.org/draft-07/schema",
    "$id": "https://raw.githubusercontent.com/./master/nextflow_schema.json",
    "title": ". pipeline parameters",
    "description": "",
    "type": "object",
    "definitions": {
        "input": {
            "title": "Input",
            "type": "object",
            "description": "Provide input to pipeline",
            "default": "",
            "required": ["input"],
            "properties": {
                "id": {
                    "type": "string",
                    "description": "Provide S3 location to sample sheet"
                },
                "referenceGenome": {
                    "type": "string",
                    "format": "directory-path",
                    "description": "Provide S3 location to folder containing cellranger reference"
                },
                "fastqPath": {
                    "type": "string",
                    "format": "directory-path",
                    "description": "fastqPath"
                },
                "cellranger_multi_config": {
                    "type": "string",
                    "format": "directory-path",
                    "description": "cellranger_multi_config"
                }

            }
        },
        "output": {
            "title": "Output",
            "type": "object",
            "description": "",
            "default": "",
            "properties": {
                "out": {
                    "type": "string",
                    "description": "Provide S3 location to store results"
                }
            }
        }
    },
    "allOf": [
        {
            "$ref": "#/definitions/Input"
        },
        {
            "$ref": "#/definitions/output"
        }
    ]
}