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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(add_label)
export(c30)
export(c40)
export(check_and_liftCC)
export(choosePalette)
export(exportResList)
export(fig)
export(geom_parallel_sets_labs)
export(getDEGs)
export(getMarkers)
export(get_Legend)
export(netVis_heatmap)
export(plotBox)
export(plotCyclone)
export(plotEnrichR)
export(plotExprsFreqVsMean)
export(plotParallel)
export(plotProjection)
export(plotProjections)
export(plotReducedDimLR)
export(plotSilhouette)
export(plotVariableFeature)
export(plotVarianceVsMean)
export(plotqcDoubletClusters)
export(printEnrichR)
export(printMarkerStats)
export(reset.fig)
export(runEnrichR)
import(ggforce)
import(ggplot2)
import(grid)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(ComplexHeatmap,Legend)
importFrom(ComplexHeatmap,draw)
importFrom(ComplexHeatmap,grid.boxplot)
importFrom(ComplexHeatmap,rowAnnotation)
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,logcounts)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(bluster,approxSilhouette)
importFrom(circlize,colorRamp2)
importFrom(cowplot,draw_label)
importFrom(cowplot,ggdraw)
importFrom(cowplot,plot_grid)
importFrom(cowplot,theme_cowplot)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,desc)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_all)
importFrom(dplyr,tally)
importFrom(dplyr,ungroup)
importFrom(enrichR,enrichr)
importFrom(enrichR,plotEnrich)
importFrom(enrichR,setEnrichrSite)
importFrom(ggbeeswarm,geom_quasirandom)
importFrom(ggforce,gather_set_data)
importFrom(ggforce,geom_parallel_sets)
importFrom(ggforce,geom_parallel_sets_axes)
importFrom(ggnewscale,new_scale_colour)
importFrom(ggplot2,GeomText)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,ggplotGrob)
importFrom(ggplot2,layer)
importFrom(ggplot2,position_nudge)
importFrom(ggrepel,geom_label_repel)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,rainbow)
importFrom(grid,grid.draw)
importFrom(grid,unit)
importFrom(rlang,.data)
importFrom(rlang,abort)
importFrom(rlang,inform)
importFrom(rlang,warn)
importFrom(scales,squish)
importFrom(scater,plotReducedDim)
importFrom(scater,plotRowData)
importFrom(scater,retrieveCellInfo)
importFrom(scuttle,summarizeAssayByGroup)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,quantile)
importFrom(stats,setNames)
importFrom(tibble,add_column)
importFrom(tibble,rownames_to_column)
importFrom(tibble,tibble)
importFrom(tidyr,complete)
importFrom(tidyr,drop_na)
importFrom(utils,flush.console)
importFrom(utils,head)
importFrom(utils,tail)
importFrom(utils,write.table)