You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hello developer,
When I run HGT-Finder with command: HGTFinder -d accessory_protein.outfmt6.tbl -s accessory_self.outfmt6.tbl -t 5455 -o HGT -r 0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9 -p 0.1 -q 0.01
The errors occured:
No X for query: CSIYN17586.t1
No X for query: CSIYN17587.t1
No X for query: CSIYN17588.t1
Could not find tax lineage for taxID: -1
My protein and ID are Denovo predicted by Augustus, nodes.dmp and namse.dmp are downloaded from NCBI taxonomy database, my nr.hdb are download from bcb.unl.edu/HGTFinder.
My proteins are blast against nr database with outfmt6 output like: CASFJ16744.t1 CCF43630.1 65.7 271 75 1 64 316 5 275 5.6e-97 364.4 CASFJ16744.t1 XP_018150623.1 63.4 279 76 2 64 316 51 329 2.0e-94 355.9 CASFJ16744.t1 KZL64686.1 63.8 271 80 1 64 316 50 320 5.8e-94 354.4 CASFJ16744.t1 OHW89509.1 63.8 271 80 1 64 316 46 316 5.8e-94 354.4 CASFJ16744.t1 OHX00758.1 63.6 275 81 2 60 316 31 304 3.7e-93 351.7 CASFJ16744.t1 XP_002999875.1 57.9 271 96 1 64 316 52 322 1.7e-85 326.2 CASFJ16744.t1 KZL78271.1 58.7 271 94 1 64 316 63 333 7.1e-84 320.9 CASFJ16744.t1 CRK20179.1 56.5 271 100 1 64 316 57 327 2.3e-82 315.8 CASFJ16744.t1 KZL79688.1 57.2 271 98 1 64 316 51 321 2.3e-82 315.8 CASFJ16744.t1 KZL86415.1 62.3 252 77 1 83 316 88 339 3.9e-82 315.1
CASFJXXXXX is my customized gene ID.
I have tried to use DBFormatter to build db with prot.accession2taxid.gz, it is very slow and I gave up.
Could you please help me or provide me with some suggestions?
Thanks,
Alex
The text was updated successfully, but these errors were encountered:
Hello developer,
When I run HGT-Finder with command:
HGTFinder -d accessory_protein.outfmt6.tbl -s accessory_self.outfmt6.tbl -t 5455 -o HGT -r 0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9 -p 0.1 -q 0.01
The errors occured:
No X for query: CSIYN17586.t1
No X for query: CSIYN17587.t1
No X for query: CSIYN17588.t1
Could not find tax lineage for taxID: -1
My protein and ID are Denovo predicted by Augustus, nodes.dmp and namse.dmp are downloaded from NCBI taxonomy database, my nr.hdb are download from bcb.unl.edu/HGTFinder.
My proteins are blast against nr database with outfmt6 output like:
CASFJ16744.t1 CCF43630.1 65.7 271 75 1 64 316 5 275 5.6e-97 364.4 CASFJ16744.t1 XP_018150623.1 63.4 279 76 2 64 316 51 329 2.0e-94 355.9 CASFJ16744.t1 KZL64686.1 63.8 271 80 1 64 316 50 320 5.8e-94 354.4 CASFJ16744.t1 OHW89509.1 63.8 271 80 1 64 316 46 316 5.8e-94 354.4 CASFJ16744.t1 OHX00758.1 63.6 275 81 2 60 316 31 304 3.7e-93 351.7 CASFJ16744.t1 XP_002999875.1 57.9 271 96 1 64 316 52 322 1.7e-85 326.2 CASFJ16744.t1 KZL78271.1 58.7 271 94 1 64 316 63 333 7.1e-84 320.9 CASFJ16744.t1 CRK20179.1 56.5 271 100 1 64 316 57 327 2.3e-82 315.8 CASFJ16744.t1 KZL79688.1 57.2 271 98 1 64 316 51 321 2.3e-82 315.8 CASFJ16744.t1 KZL86415.1 62.3 252 77 1 83 316 88 339 3.9e-82 315.1
CASFJXXXXX is my customized gene ID.
I have tried to use DBFormatter to build db with prot.accession2taxid.gz, it is very slow and I gave up.
Could you please help me or provide me with some suggestions?
Thanks,
Alex
The text was updated successfully, but these errors were encountered: