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ChangeLog
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ChangeLog
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2022-02-03 Yukiteru Ono <[email protected]>
Release Version 2.0.2.
* Added function:
Error simulation for templates was implemented.
2020-10-30 Yukiteru Ono <[email protected]>
Release Version 2.0.1.
* Added function:
Prefix of read ID is able to be changed.
Option --id-prefix was added.
2020-6-20 Yukiteru Ono <[email protected]>
Release Version 2.0.0.
* Added function:
The function to simulate Nanopore reads was added.
* Abolished function:
The function to simulate Circular consensus Read (CCS) was removed.
* Changed:
In the model-based simulation, we utilized gamma distribution for read
length.
* Changed:
In the model-based simulation, we utilized exponential distribution for
read accuracy. The only parameter of this model is a mean of accuracy,
and minimum and maximum of the accuracy are determined by the mean.
* Changed:
In the model-based simulation, quality codes are generated by FIC-HMM
for each chemistry of PacBio and Nanopore. "--model_qc" option was
replaced with "--hmm_model" option.
* Changed:
Default values of options were fitted to the latest chemistries.
2013-09-01 Takamasa Imai <[email protected]>
Release Version 1.0.3.
* Added function:
In order to reproduce the output of PBSIM, "--seed" option was added.
This option fixes the seed of the pseudorandom number.
2012-10-04 Yukiteru Ono <[email protected]>
Release Version 1.0.2.
* Added function:
Samples (specified by --sample-fastq) were able to be reused.
--sample-profile-id is added and
--fastq is renamed to --sample-fastq.
* Changed:
Multi-FASTA files were able to be acceptable for --sample-fastq.
* Changed:
The range of coverage depth (specified by --depth) was changed
to be from 0 to the maximum integer size, and any float number
was acceptable.
2012-06-29 Yukiteru Ono <[email protected]>
Release Version 1.0.1.
* Changed:
The output format of read positions in the reference sequence
was changed to MAF.
* Fixed bug:
The swapping between --accuracy-max and --accuracy-min was fixed.