main.tex

\documentclass[a4paper,12pt]{book}
\usepackage[utf8]{inputenc}
\usepackage{amsmath,amssymb,latexsym}
\usepackage{graphicx,subfigure}
\usepackage{tcolorbox}
\usepackage{wrapfig}
\usepackage{rotating}
\usepackage[margin=2.5cm]{geometry}
\newtheorem{Equation}{\indent Equation}[section]
\textwidth=6in
\renewcommand{\baselinestretch}{1.5}

\begin{document}

\author{Zachary Matheson}
\title{Everything you wish you'd known when you STARTED your PhD}
\date{Revised November 2017}

\frontmatter
\maketitle
\tableofcontents

\mainmatter
\include{./TeX_files/chapter01} % Pairing
\include{./TeX_files/chapter02} % TDHF, inertia
\include{./TeX_files/chapter03} % RPA vs. ATDHF
\include{./TeX_files/chapter04} % ATDHFB
\include{./TeX_files/chapter05} % Shape deformations
\include{./TeX_files/chapter06} % Notes on HFODD
\include{./TeX_files/chapter07} % Nuclear clustering
\include{./TeX_files/chapter08} % Bayesian Inference
\include{./TeX_files/chapter09} % UQ for Nuclear DFT
\include{./TeX_files/chapter10} % HFB, DFT, and Beyond Mean-field corrections
\include{./TeX_files/chapter11} % The Fission Process

\backmatter
% bibliography, glossary and index would go here.
\bibliography{main}
\bibliographystyle{abbrv}

\end{document}