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score.py
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score.py
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import networkx as nx
import torch
import torch.nn.functional as F
from torch_geometric.nn import GCNConv
from torch_geometric.nn.inits import reset
import random
import numpy as np
from torch_geometric import utils
import scipy
import ndlib
import ndlib.models.epidemics as ep
import ndlib.models.ModelConfig as mc
import statistics as s
import time
from util import combinations, substract, subcombs
def scoreIC(g, config, node, seedset):
backup = []
for item in seedset:
backup.append(item)
backup.remove(node)
total = []
for i in range(1000):
g_mid = g.__class__()
g_mid.add_nodes_from(g)
g_mid.add_edges_from(g.edges)
model_mid = ep.IndependentCascadesModel(g_mid)
config_mid = mc.Configuration()
config_mid.add_model_initial_configuration('Infected', backup)
for a, b in g_mid.edges():
weight = config.config["edges"]['threshold'][(a, b)]
g_mid[a][b]['weight'] = weight
config_mid.add_edge_configuration('threshold', (a, b), weight)
model_mid.set_initial_status(config_mid)
iterations = model_mid.iteration_bunch(5)
trends = model_mid.build_trends(iterations)
total_no = 0
for i in range(5):
a = iterations[i]['node_count'][1]
total_no += a
total.append(total_no)
final = s.mean(total)
return final
def Y(df):
EY = s.mean(df['result'])
VY = s.pvariance(df['result'])
return EY, VY
def SobolT(df, result):
sobolt = {}
for node in result:
backup = []
for item in result:
backup.append(item)
backup.remove(node)
var = []
for sub in combinations(backup):
means = []
for case in combinations([node]):
total = []
seeds = sub + case
subdf = df
for item in result:
if item in seeds:
a = (subdf[item] == 1)
else:
a = (subdf[item] == 0)
subdf = subdf[a]
means.append(s.mean(subdf['result']))
var.append(s.pvariance(means))
sobolt[node] = s.mean(var)
return sobolt
def sobols(df, result):
allsobol = {}
for blist in combinations(result):
if blist == []:
continue
rest = substract(result, blist)
exp = []
for comb in combinations(blist):
means = []
for sub in combinations(rest):
totals = []
seeds = comb + sub
conditions =[]
#subdf = df
for item in result:
if item in seeds:
a = (df[item] == 1)
else:
a = (df[item] == 0)
#subdf = df[a]
conditions.append(a)
subdf = df[conditions[0] & conditions[1] & conditions[2] & conditions[3] & conditions[4]]
means.append(s.mean(subdf['result']))
exp.append(s.mean(means))
if len(blist) == 1:
score = s.pvariance(exp)
else:
sumsobol = 0
for item in subcombs(blist):
string = ''
for thing in item:
string += str(thing)
string += '.'
sumsobol += allsobol[string]
score = s.pvariance(exp) - sumsobol
string = ''
for item in blist:
string += str(item)
string += '.'
allsobol[string] = score
sorted_sobol = {}
for k in sorted(allsobol, key=len):
sorted_sobol[k] = allsobol[k]
return sorted_sobol
def IE(df, result):
full = df[(df[result[0]] == 1) & (df[result[1]] == 1) & (df[result[2]] == 1) & (df[result[3]] == 1) & (df[result[4]] == 1)]
E = s.mean(full['result'])
std = s.stdev(full['result'])
return E, std
'''
# sobol total of a set sized-k
def STS(df, result):
k = int(0.5*len(result))
sobolt = {}
for set in combinations(result):
if len(set) < k:
continue
if len(set) > k:
break
name = ''
for item in set:
name += str(item)
name += '.'
backup = []
for item in result:
backup.append(item)
backup = substract(backup, set)
var = []
for sub in combinations(backup):
means = []
for case in combinations(set):
total = []
seeds = sub + case
subdf = df
for item in result:
if item in seeds:
a = (subdf[item] == 1)
else:
a = (subdf[item] == 0)
subdf = subdf[a]
means.append(s.mean(subdf['result']))
var.append(s.pvariance(means))
sobolt[name] = s.mean(var)
return sobolt
'''
def effectIC(g, config, result):
input = []
for i in range(1000):
g_mid = g.__class__()
g_mid.add_nodes_from(g)
g_mid.add_edges_from(g.edges)
model_mid = ep.IndependentCascadesModel(g_mid)
config_mid = mc.Configuration()
config_mid.add_model_initial_configuration('Infected', result)
for a, b in g_mid.edges():
weight = config.config["edges"]['threshold'][(a, b)]
g_mid[a][b]['weight'] = weight
config_mid.add_edge_configuration('threshold', (a, b), weight)
model_mid.set_initial_status(config_mid)
iterations = model_mid.iteration_bunch(5)
trends = model_mid.build_trends(iterations)
total_no = 0
for j in range(5):
a = iterations[j]['node_count'][1]
total_no += a
input.append(total_no)
e = s.mean(input)
v = s.stdev(input)
return e,v
def effectLT(g, config, result):
input = []
for i in range(1000):
g_mid = g.__class__()
g_mid.add_nodes_from(g)
g_mid.add_edges_from(g.edges)
model_mid = ep.ThresholdModel(g_mid)
config_mid = mc.Configuration()
config_mid.add_model_initial_configuration('Infected', result)
for a, b in g_mid.edges():
weight = config.config["edges"]['threshold'][(a, b)]
g_mid[a][b]['weight'] = weight
config_mid.add_edge_configuration('threshold', (a, b), weight)
for i in g.nodes():
threshold = random.randrange(1, 20)
threshold = round(threshold / 100, 2)
config_mid.add_node_configuration("threshold", i, threshold)
model_mid.set_initial_status(config_mid)
iterations = model_mid.iteration_bunch(5)
trends = model_mid.build_trends(iterations)
total_no = iterations[4]['node_count'][1]
input.append(total_no)
e = s.mean(input)
v = s.stdev((input))
return e,v