Check for unsupported observable IDs in sigma expressions #9899
Workflow file for this run
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| name: Windows Tests | |
| on: | |
| push: | |
| merge_group: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '48 4 * * *' | |
| pull_request: | |
| branches: | |
| - develop | |
| - master | |
| jobs: | |
| build: | |
| name: Tests Windows | |
| runs-on: windows-latest | |
| env: | |
| AMICI_SKIP_CMAKE_TESTS: "TRUE" | |
| openBLAS_version: "0.3.19" | |
| AMICI_DLL_DIRS: "C:\\BLAS\\OpenBLAS\\bin" | |
| LIB: "C:/BLAS/OpenBLAS/lib" | |
| CFLAGS: "-nologo" | |
| CXXFLAGS: "-nologo" | |
| LDFLAGS: "-nologo" | |
| strategy: | |
| matrix: | |
| python-version: [ "3.11" ] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v4 | |
| - run: git fetch --prune --unshallow | |
| - shell: bash | |
| run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV | |
| - shell: bash | |
| run: echo "C:\\BLAS\\OpenBLAS\\bin" >> $GITHUB_PATH | |
| - shell: bash | |
| run: echo "BLAS_LIBS=-LIBPATH:C:/BLAS/OpenBLAS/lib openblas.lib" >> $GITHUB_ENV | |
| - shell: bash | |
| run: echo "BLAS_CFLAGS=-IC:/BLAS/OpenBLAS/include/openblas/" >> $GITHUB_ENV | |
| # Developer Command Prompt for Microsoft Visual C++ | |
| - uses: ilammy/msvc-dev-cmd@v1 | |
| - name: Install deps | |
| shell: bash | |
| run: | | |
| python -m pip install --upgrade pip \ | |
| && choco install -y ninja \ | |
| && choco install -y swig | |
| - name: Install OpenBLAS | |
| shell: powershell | |
| run: scripts/installOpenBLAS | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: OpenBLAS | |
| path: C:\BLAS\OpenBLAS | |
| - name: Create sdist | |
| working-directory: python/sdist | |
| run: pip install build && python -m build --sdist | |
| - name: Install sdist | |
| working-directory: python/sdist | |
| shell: bash | |
| run: pip install -v $(ls -t dist/amici-*.tar.gz | head -1)[petab,test] | |
| - run: python -m amici | |
| - name: Get Pooch Cache Directory | |
| id: get-pooch-cache | |
| run: | | |
| echo "pooch-cache=$(python -c 'import pooch; print(pooch.os_cache("pooch"))')" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Cache Pooch Directory | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.pooch-cache }} | |
| key: ${{ runner.os }}-py${{ matrix.python-version }}-${{ github.job }} | |
| - name: Run Python tests | |
| shell: bash | |
| run: | | |
| python -m pytest \ | |
| --ignore-glob=*petab* \ | |
| --ignore-glob=*special* \ | |
| --ignore-glob=*test_splines.py \ | |
| python/tests | |
| - name: Python tests splines | |
| if: ${{ github.base_ref == 'master' || github.event.merge_group.base_ref == 'master'}} | |
| run: python -m pytest python/tests/test_splines.py |