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Table and Figure S1 legends #54

Merged
merged 10 commits into from
Mar 4, 2024
Merged

Table and Figure S1 legends #54

merged 10 commits into from
Mar 4, 2024

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sjspielman
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Closes #32
Towards #14

This PR adds the legend for Table S1 and Figure S1. I included the link to display Fig S1 in the document, but not Table S1 b/c it's a table. But, we could add a markdown version of the table directly in here if we want..?

For Figure S1, I am looking for some recommendations to tighten up the wording. I feel it's a little repetitive now. I tried to ameliorate some of that by grouping some text that was similar to either all panels, or all panels B-D, but I think it can maybe be tightened up further. On the other hand, we could go the exact opposite route and not tighten up at all, but "loosen" the text to be more descriptive about each panel on its own terms!

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@sjspielman
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Hm maybe we need supplemental in another document, because it is insisting on labeling this as Figure 5 as the 5th figure in the document!

Screenshot 2024-02-28 at 4 22 33 PM

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github-actions bot commented Mar 4, 2024

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@allyhawkins allyhawkins left a comment

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This looks good, but we should probably try and figure out the issue with figure 5 being prefixed to the legend.
On that same note, I noticed that all the other ones have Figure X: Figure X. Description. I think we should make sure that the Figure X is only written one time in the legend title.

content/100.figure-table-legends.md Outdated Show resolved Hide resolved
All remaining columns give the number of libraries (as designated with `(L)`) with the given suspension or additional modality.


![**Figure S1. Results from benchmarking `alevin-fry` and `CellRanger` performance.**](https://raw.githubusercontent.com/AlexsLemonade/scpca-paper-figures/main/figures/compiled_figures/pngs/figure_s1.png?sanitize=true){#fig:figs1 width="7in"}
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This one is still rendering as Figure 5. I feel like we might want to figure that out before merging this in?

content/100.figure-table-legends.md Outdated Show resolved Hide resolved
@sjspielman
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Aha, found answers to supplemental figure numbering - https://github.com/manubot/try-manubot/blob/main/USAGE.md#figures

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Legend titles now working as expected!

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@allyhawkins allyhawkins left a comment

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LGTM!

@sjspielman sjspielman merged commit c72242e into main Mar 4, 2024
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@sjspielman sjspielman deleted the sjspielman/s1-legends branch March 7, 2024 01:14
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Table legend: Table S1 legend
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