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linting + adding participants
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2 changes: 0 additions & 2 deletions README.md
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# ABLeS website repository


# Acknowledgements

This repository makes use of the ELIXIR toolkit theme:

[![theme badge](https://img.shields.io/badge/ELIXIR%20toolkit%20theme-jekyll-blue?color=0d6efd)](https://github.com/ELIXIR-Belgium/elixir-toolkit-theme)

6 changes: 3 additions & 3 deletions acknowledgements.md
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The ABLeS program should be both cited and acknowledged in any publication, presentation or grant application that was supported by data or services provided by ABLeS.

1. Use the following citation:
> Gustafsson, Ove Johan Ragnar, Al Bkhetan, Ziad, Francis, Rhys & Manos, Steven. (2023). *Enabling national step changes in bioinformatics through ABLeS, the Australian BioCommons Leadership Share (3.0).* Zenodo. [https://doi.org/10.5281/zenodo.10139651](https://doi.org/10.5281/zenodo.10139651)

> Gustafsson, Ove Johan Ragnar, Al Bkhetan, Ziad, Francis, Rhys & Manos, Steven. (2023). *Enabling national step changes in bioinformatics through ABLeS, the Australian BioCommons Leadership Share (3.0).* Zenodo. [https://doi.org/10.5281/zenodo.10139651](https://doi.org/10.5281/zenodo.10139651)
2. Use the following acknowledgement statement:
>"The authors acknowledge the provision of computing and data resources provided by the Australian BioCommons Leadership Share (ABLeS) program. This program is co-funded by Bioplatforms Australia (enabled by NCRIS), the National Computational Infrastructure and Pawsey Supercomputing Research Centre.”

>"The authors acknowledge the provision of computing and data resources provided by the Australian BioCommons Leadership Share (ABLeS) program. This program is co-funded by Bioplatforms Australia (enabled by NCRIS), the National Computational Infrastructure and Pawsey Supercomputing Research Centre."
## ABLeS co-authorship policy

Authorship is NOT expected for routine / simple services provided (e.g. tool installation) and an acknowledgement is sufficient in these cases. We approach authorship issues with a generous spirit and aim to fairly attribute contributions.

In some cases, it may be appropriate for ABLeS support staff, or specialists at NCI or Pawsey to be co-authors on publications. Examples of this include when these specialists provide significant input into the publication, including a significant contribution to method / protocol / pipeline development, study design, data and results analysis, or interpretation.

1 change: 0 additions & 1 deletion contact-us.md
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| Requesting tool installations | Please use the [ABLeS GoogleForm](https://docs.google.com/forms/d/e/1FAIpQLScpiyqERdxw6gMxjlq_CkiI3qvJ60YaeWHKTJChMjcnv8aBBA/viewform?usp=sf_link) |
| Reporting challenges with a specific bioinformatics workflow, or requesting assistance with this workflow | Please use the [ABLeS GoogleForm](https://docs.google.com/forms/d/e/1FAIpQLSere1PvgPEuJkpvQUk1-11C88IAeQNQKEUFc-Qgbn5GgKK2jw/viewform?usp=sf_link) |
| Any other issue | Email: <br/> <[email protected]> <br/> <[email protected]> |

11 changes: 5 additions & 6 deletions faq.md
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<div class="accordion-body">
The cost of running jobs on GADI is measured by service units (SU). The number of SUs used by a job can vary based on two main factors:
<ol>
<li>The amount of walltime used by the job.</li>
<li>The amount of walltime used by the job.</li>
<li>The resources reserved for the job.</li>
</ol>
More details on job debiting can be found <a href="https://opus.nci.org.au/display/Help/2.+Compute+Grant+and+Job+Debiting">here</a>
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</h2>
<div id="collapse-faq-2" class="accordion-collapse collapse" aria-labelledby="heading-faq-2" data-bs-parent="#accordion-faq">
<div class="accordion-body">
The allocation of SUs is on a quarterly basis. At the beginning of each quarter, BioCommons will allocate 100 kSU of computational resources to each group. Additional resources will be allocated according to the quarterly plan proposed by the group, as well as the resources still available in that quarter.
The allocation of SUs is on a quarterly basis. At the beginning of each quarter, BioCommons will allocate 100 kSU of computational resources to each group. Additional resources will be allocated according to the quarterly plan proposed by the group, as well as the resources still available in that quarter.
<br/>Groups should utilise the allocated SUs:
<ol>
<li>For projects approved by the steering committee.</li>
<li>For projects approved by the steering committee.</li>
<li>Using the tools, methods and/or workflows that are suited to their group requirements.</li>
<li>While making sure to consider that the allocation is a shared resource for their group (if in doubt, consult with your group bioinformatics lead, or the BioCommons)</li>
</ol>
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<li>Groups can request additional resources when needed through the <a href="https://docs.google.com/forms/d/e/1FAIpQLSfzHJajEKTnGuYWb1gLRR2nlUExLIRM7qSGy_hhbiCKB3KX2Q/viewform?usp=sf_link"><strong>GoogleForm</strong></a>, if the quarterly plan did not accurately predict resource requirements.</li>
<li>Unused SUs **can NOT** be rolled-over to the next quarter. </li>
<li>As ABLeS is a shared resource covering many groups, it is expected that each group will adopt a best-effort approach to firstly estimate their computational requirement realistically and accurately, and also actively manage the allocations which are provided (i.e. don’t waste your allocation, as the resource is still finite). </li>
</ul>
</ul>
</blockquote>
</div>
</div>
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</h2>
<div id="collapse-faq-3" class="accordion-collapse collapse" aria-labelledby="heading-faq-3" data-bs-parent="#accordion-faq">
<div class="accordion-body">
Please see <a href="/ables/resources">the resources page</a> for more information on the software that is available at the NCI.
Please see <a href="/ables/resources">the resources page</a> for more information on the software that is available at the NCI.
</div>
</div>
</div>
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</div>
</div>
</div>

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