Introduction

This repo contains Curate Shiny apps:

(ii) CURATE - to add information about trials to our database to be used

Application Setup

The app can be run in 2 ways - with and without docker.

1. Docker usage:

   Edit the docker-compose.yml file according to your filepaths.

    docker-compose up --build
   
    docker-compose down
   

   This will perform all the setup necessary and initialize the db with trials.ndjson and use it for the 2 Shiny apps.

   
   

   Access the Shiny apps through a web browser at:

   http://127.0.0.1:3838/trial-match/R/browseApp/

   http://127.0.0.1:3838/trial-match/R/curateApp/

2. Local usage:

   (a) Use the Dockerfile as a guide to install R, required R packages, and ShinyServer.

   (b) Make sure that your installation of ShinyServer has access to the source code of this repo.

   (c) Install MongoDB using the instructions available here.

   (d) Run an active monogod process with the path to where the database files are stored.

   mongod --dbpath /Users/aanu/Documents/repos/trial-match/data/demo
   

Edit the config.yml file according to where your data is stored.