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# $SESSIONTITLE | ||
# Gfastar: a tool suite to assist genome assembly | ||
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This session is part of [**Biodiversity Genomics Academy 2023**](https://BGA23.org) | ||
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## Session Leader(s) | ||
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$SESSIONLEADERS | ||
Giulio Formenti | ||
Research Assistant Professor, The Rockefeller University | ||
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Cassidy Johnson | ||
Graduate Fellow, The Rockefeller University | ||
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## Description | ||
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$SESSIONDESCRIPTION | ||
By the end of this session you will be able to: | ||
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1. Compute genome assembly summary statistics using gfastats | ||
2. Manipulate genome assembly graphs using gfastats | ||
3. Compute QV estimates using kreeq | ||
4. Evaluate genome assemblies at scale using Buttercup | ||
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## Prerequisites | ||
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$SESSIONPREREQUISITES | ||
1. Understanding basic terms in genome assembly, such as reads, contigs, scaffolds, ... | ||
2. Basic command line experience. | ||
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!!! warning "Please make sure you meet the prerequisites above" | ||
!!! warning "Please make sure you MEET THE PREREQUISITES and READ THE DESCRIPTION above" | ||
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You will get the most out of this session if you meet the prerequisites above. | ||
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||
Please also read the description carefully to see if this session is relevant to you. | ||
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If you don't meet the prerequisites, please consider emailing tol-training at sanger.ac.uk to cancel your slot so that someone else on the waitlist might attend. | ||
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||
If you have a webinar-only or recording-only slot, there is no need to cancel that as these are view-only slots and are effectively unlimited. | ||
If you don't meet the prerequisites or change your mind based on the description or are no longer available at the session time, please email tol-training at sanger.ac.uk to cancel your slot so that someone else on the waitlist might attend. |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,23 +1,33 @@ | ||
# $SESSIONTITLE | ||
# Gfastar: a tool suite to assist genome assembly | ||
|
||
This session is part of [**Biodiversity Genomics Academy 2023**](https://BGA23.org) | ||
|
||
## Session Leader(s) | ||
|
||
$SESSIONLEADERS | ||
Giulio Formenti | ||
Research Assistant Professor, The Rockefeller University | ||
|
||
Cassidy Johnson | ||
Graduate Fellow, The Rockefeller University | ||
|
||
## Description | ||
|
||
$SESSIONDESCRIPTION | ||
By the end of this session you will be able to: | ||
|
||
1. Compute genome assembly summary statistics using gfastats | ||
2. Manipulate genome assembly graphs using gfastats | ||
3. Compute QV estimates using kreeq | ||
4. Evaluate genome assemblies at scale using Buttercup | ||
|
||
## Prerequisites | ||
|
||
$SESSIONPREREQUISITES | ||
1. Understanding basic terms in genome assembly, such as reads, contigs, scaffolds, ... | ||
2. Basic command line experience. | ||
|
||
!!! warning "Please make sure you meet the prerequisites above" | ||
!!! warning "Please make sure you MEET THE PREREQUISITES and READ THE DESCRIPTION above" | ||
|
||
You will get the most out of this session if you meet the prerequisites above. | ||
|
||
Please also read the description carefully to see if this session is relevant to you. | ||
|
||
If you don't meet the prerequisites, please consider emailing tol-training at sanger.ac.uk to cancel your slot so that someone else on the waitlist might attend. | ||
|
||
If you have a webinar-only or recording-only slot, there is no need to cancel that as these are view-only slots and are effectively unlimited. | ||
If you don't meet the prerequisites or change your mind based on the description or are no longer available at the session time, please email tol-training at sanger.ac.uk to cancel your slot so that someone else on the waitlist might attend. |
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